View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_6 (Length: 485)
Name: NF12898_low_6
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 25 - 474
Target Start/End: Complemental strand, 32015470 - 32015021
Alignment:
| Q |
25 |
tagttcaaaatcaagacaataaaacttaaaacatcaagcaacaagttgttcataatnnnnnnncgacttaaaga-gtacaaggttgaacaagatgcccca |
123 |
Q |
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| T |
32015470 |
tagttcaaaatcaagacaataaaacttaaaacatcaagcaacaagttgttcataataaaaaaacgacttaaaaaagtaagagggtgaacaagatgcccca |
32015371 |
T |
|
| Q |
124 |
aaacaaaaatttcaagtatgattctatgaacaaaattgggactttttcgtgtgagtctgattaattatttgacaaaagtttttgtctttgacaatggatg |
223 |
Q |
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| T |
32015370 |
aaacaaaaatttcaagtatgattctatgaacaaaattgggactttttcgtgtgagtctgattaattatttgacaaaagttt--gtctttgacaatggatg |
32015273 |
T |
|
| Q |
224 |
gtgaagaagggttgccaac-caaagcataacaagtcgcttctagacttctacttctagttctatttggagaagaacaatgctttgcactgagccacattt |
322 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32015272 |
gtgaagaagggttgccaactcaaagcataacaagttgcttctagacttctgcttctagttctatttggagaagaacaatgctttgcgctgagccacattt |
32015173 |
T |
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| Q |
323 |
gtgcttctcgttgcaaaataattgtcccggatgaatgtagcaaacattgtttctccatctagaaaacgaagcatggaacttacatttatagcaccttgta |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
32015172 |
gtgcttctcgttgcaaaataattgtcccggatgaatgtagcaaacattgtttctccatctagaaaacgaagcatgcaacatacatttatagcaccttgta |
32015073 |
T |
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| Q |
423 |
ttggttttctccaaactgtgctgactaattgatgctgcacaacttctctgct |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32015072 |
ttggttttctccaaactgtgctgactaattgatgctgcacaacttctctgct |
32015021 |
T |
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