View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_7 (Length: 462)
Name: NF12898_low_7
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 28 - 462
Target Start/End: Complemental strand, 38423365 - 38422931
Alignment:
| Q |
28 |
ccaatcaatcccactacttcaatgtttaaaacttctccatcaagttcaaaccaccaaacatgaccatattatgaggattatttattattcataaataaaa |
127 |
Q |
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| T |
38423365 |
ccaatcaatcccactacttcaatgtttaaaacttctccatcaagttcaaaccaccaaacatgaccatattatgaggattatttattattcataaataaaa |
38423266 |
T |
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| Q |
128 |
cacttgtttttcaactatattcctaattttctttttctctatcccattnnnnnnnccttgagtactaagaaaagccaacgtggaaccttccttttctcct |
227 |
Q |
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| T |
38423265 |
cacttgtttttcaactatattcctaattttctttttctctatcccattaaaaaaaccttgagtactaagaaaagccaacgtggaaccttccttttctcct |
38423166 |
T |
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| Q |
228 |
taatataaaccccaacccatctcttagttgcaaacacaaagcaaagttgattatttgagtaattaatcaaaggaaaaaacggaatgtcaattgttgggaa |
327 |
Q |
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| T |
38423165 |
taatataaaccccaacccatctcttagttgcaaacacaaagcaaagttgattatttgagtaattaatcaaaggaaaaaacgtaatgtcaattgttgggaa |
38423066 |
T |
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| Q |
328 |
gaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatcatcattcaagtggaacagacttactttgcctgtt |
427 |
Q |
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| T |
38423065 |
gaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatcatcattcaagtggaacacacttactttgcctgtt |
38422966 |
T |
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| Q |
428 |
tcattcatggatgatgttgtttttaaggttgtctc |
462 |
Q |
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| T |
38422965 |
tcattcatggaagatgttgtttttaaggttgtctc |
38422931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 38413218 - 38413044
Alignment:
| Q |
291 |
taatcaaaggaaaaaacggaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatc |
390 |
Q |
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||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
38413218 |
taatcaaagagaaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaacattgaggttgaagtttttgtggcaatc |
38413119 |
T |
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| Q |
391 |
atcatc---attcaagtggaacagacttactttgcctgtttcattcatggatgatgttgtttttaaggttgtctc |
462 |
Q |
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| T |
38413118 |
ttcatcaggattcaggtggaacagacttacttcgccggtttcattcatggaagatattgtttttaaggttgtctc |
38413044 |
T |
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