View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12898_low_9 (Length: 426)

Name: NF12898_low_9
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12898_low_9
NF12898_low_9
[»] chr7 (11 HSPs)
chr7 (13-410)||(31202692-31203089)
chr7 (17-248)||(31061979-31062210)
chr7 (13-248)||(31049652-31049887)
chr7 (17-248)||(31162552-31162783)
chr7 (17-248)||(31144728-31144959)
chr7 (17-244)||(31107150-31107377)
chr7 (323-408)||(31145031-31145116)
chr7 (323-408)||(31162855-31162940)
chr7 (323-405)||(31049959-31050041)
chr7 (328-405)||(31107456-31107533)
chr7 (328-407)||(31062450-31062529)
[»] chr5 (2 HSPs)
chr5 (17-120)||(42315247-42315350)
chr5 (20-124)||(37016363-37016467)
[»] chr3 (1 HSPs)
chr3 (20-121)||(24268665-24268766)
[»] chr4 (2 HSPs)
chr4 (13-63)||(42736248-42736298)
chr4 (13-63)||(42768149-42768199)
[»] chr8 (1 HSPs)
chr8 (28-56)||(8132910-8132938)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 31203089 - 31202692
Alignment:
Q  13 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  31203089 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatgcaatgttttgataagtcccgcaatgccggcaacatgagggcaagacata 31202990  T
Q  113 gaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31202989 gaagttccttgtagtacattgaatggaaaattgttgcgattgtctgtttttaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacac 31202890  T
Q  213 ctggtgcagttacatcaggctgaaacaaaaaacaaattaaataccccattgnnnnnnnnngacaactaaggaggaccattactatagatagttgattact 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||| |||||||||||||||||||||||||||    
T  31202889 ctggtgcagttacatcaggctgaaacaaaaaacaaattaaataccccattgaaaaaaaaagacaactaaggaagaccattactatagatagttgattact 31202790  T
Q  313 agtccatgtatatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccatag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31202789 agtccatgtatatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccattactggagctggctttcttccatag 31202692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 31061979 - 31062210
Alignment:
Q  17 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||| | || |||||||||||||||||||||||||    
T  31061979 gtggtcataatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtcccagcaacatgagggcaagacatagaag 31062078  T
Q  117 ttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacacctgg 216  Q
    ||||||| | ||||||||| ||||||     |||||||||||||| ||||||||||||||| ||  |||| |||||||||||||||||||||||||| ||    
T  31062079 ttccttgcattacattgaagggaaaacctcggcgattgtctgttagtaaattagatgcactagcaaacaatgaataggcagcaagtatgttcacaccagg 31062178  T
Q  217 tgcagttacatcaggctgaaacaaaaaacaaa 248  Q
    ||||||||||||||||||||||||||||||||    
T  31062179 tgcagttacatcaggctgaaacaaaaaacaaa 31062210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 31049652 - 31049887
Alignment:
Q  13 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacata 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||| |||| ||||||||||| |||||||||    
T  31049652 acctgtggtcataatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtgccagcaacatgaggacaagacata 31049751  T
Q  113 gaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacac 212  Q
    |||||||||||| ||| |||||||||||||      ||||||||||||| |||||||||  |||||||  |||| |||||||||||||||||||||||||    
T  31049752 gaagttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaaacaatgaataggcagcaagtatgttcacac 31049851  T
Q  213 ctggtgcagttacatcaggctgaaacaaaaaacaaa 248  Q
    | || |||||||||||||||||||||||||||||||    
T  31049852 ccggcgcagttacatcaggctgaaacaaaaaacaaa 31049887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 31162552 - 31162783
Alignment:
Q  17 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||| |||| ||||||||||| |||||||||||||    
T  31162552 gtggtcatgatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtgccagcaacatgaggacaagacatagaag 31162651  T
Q  117 ttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacacctgg 216  Q
    |||||||| ||| |||||||||||||      ||||||||||||| |||||||||  |||||||   ||| |||||||||||||||||||||||||| ||    
T  31162652 ttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaagcaatgaataggcagcaagtatgttcacacccgg 31162751  T
Q  217 tgcagttacatcaggctgaaacaaaaaacaaa 248  Q
     |||||||||||||||||||||||||||||||    
T  31162752 cgcagttacatcaggctgaaacaaaaaacaaa 31162783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 31144728 - 31144959
Alignment:
Q  17 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||| ||| ||||  |||||||||| |||||||||||||    
T  31144728 gtggtcatgatagctgatttaatagctgcaggactccaattaggatgaagtgttttgataagtccagcagtgccaacaacatgaggacaagacatagaag 31144827  T
Q  117 ttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacacctgg 216  Q
    |||||||| ||| |||||||||||||      ||||||||||||| |||||||||  |||||||   ||| |||||||||||||||||||||||||| ||    
T  31144828 ttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaagcaatgaataggcagcaagtatgttcacacccgg 31144927  T
Q  217 tgcagttacatcaggctgaaacaaaaaacaaa 248  Q
     |||||||||||||||||||||||||||||||    
T  31144928 cgcagttacatcaggctgaaacaaaaaacaaa 31144959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 31107150 - 31107377
Alignment:
Q  17 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 116  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||   ||||||||| | ||| ||| ||||||||||||| || |||||||||||||    
T  31107150 gtggtcattatagccgatttaatagctgctggactccaattaggatgaagtgttttgattaatccagcagtgccggcaacatgtggacaagacatagaag 31107249  T
Q  117 ttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacacctgg 216  Q
    ||||||| | ||||||||||||||||      ||| ||||||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  31107250 ttccttgcattacattgaatggaaaacctcgacgagtgtctgttattaaattagatgcacttgcaaacaatgaataggcagcgagtatgttcacacctgg 31107349  T
Q  217 tgcagttacatcaggctgaaacaaaaaa 244  Q
     ||||||||||||||||||||| |||||    
T  31107350 cgcagttacatcaggctgaaacgaaaaa 31107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 31145031 - 31145116
Alignment:
Q  323 tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat 408  Q
    |||| |||||||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31145031 tataaacaccttgagtatatatggttgaactttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat 31145116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 31162855 - 31162940
Alignment:
Q  323 tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat 408  Q
    |||| |||||||||||||  |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162855 tataaacaccttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggctttcttccat 31162940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 31049959 - 31050041
Alignment:
Q  323 tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttc 405  Q
    |||| |||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31049959 tataaacaccttgagtatatatggctgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc 31050041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 31107456 - 31107533
Alignment:
Q  328 acaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttc 405  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  31107456 acaccttgagtattgatggttgaactttatttggtcctctagaagagtaggaagccataactggagctggctttcttc 31107533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 407
Target Start/End: Original strand, 31062450 - 31062529
Alignment:
Q  328 acaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttcca 407  Q
    |||||||||||||  |||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31062450 acaccttgagtatatatggttgaacttgatttggacctctagatgagaatgaagccataactggagctggctttcttcca 31062529  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 42315350 - 42315247
Alignment:
Q  17 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 116  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||   |||||||| ||| || || ||||| |  ||||||||||| | ||||||||    
T  42315350 gtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccatagaag 42315251  T
Q  117 ttcc 120  Q
    ||||    
T  42315250 ttcc 42315247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 37016363 - 37016467
Alignment:
Q  20 gtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaagttc 119  Q
    |||||||| || ||||| || || |||||||||||| |||||||   ||| |||| ||| ||  ||||||| ||||||||||| |||||||| |||||||    
T  37016363 gtcatgatggcagatttgatggcagctggactccaactaggatgaagtgtcttgagaagaccgacaatgccagcaacatgaggacaagacattgaagttc 37016462  T
Q  120 cttgt 124  Q
    |||||    
T  37016463 cttgt 37016467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 24268766 - 24268665
Alignment:
Q  20 gtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaagttc 119  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||   ||||||||| |||  |  ||||| | | |||||||||||| || ||||||||||    
T  24268766 gtcatgatagcagatttaaaagctgcaggactccaattaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc 24268667  T
Q  120 ct 121  Q
    ||    
T  24268666 ct 24268665  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 42736298 - 42736248
Alignment:
Q  13 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatg 63  Q
    ||||||||||||||| ||||| || ||||||||||||||||||| ||||||    
T  42736298 acctgtggtcatgattgctgacttgatagctgctggactccaatcaggatg 42736248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 42768149 - 42768199
Alignment:
Q  13 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatg 63  Q
    ||||||||||||||| || || |||||||| ||||||||||||| ||||||    
T  42768149 acctgtggtcatgatcgcggacttaatagcagctggactccaatcaggatg 42768199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 8132910 - 8132938
Alignment:
Q  28 agctgatttaatagctgctggactccaat 56  Q
    |||||||||||||||||||||||||||||    
T  8132910 agctgatttaatagctgctggactccaat 8132938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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