View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_high_12 (Length: 386)
Name: NF12899_high_12
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 1193611 - 1193476
Alignment:
| Q |
52 |
ctaattatgtgacgattatattttatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaaccaaatcaatggagaaaatgggac |
151 |
Q |
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| T |
1193611 |
ctaattatgtgacaattttattttata--aaggttggccgaaattctgtataacgagaagcagttgcgtttgaaaactaaatcaatggagaaaatgggac |
1193514 |
T |
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| Q |
152 |
gaccatttattgaagctgatgtatctggaatgaagtaa |
189 |
Q |
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| T |
1193513 |
gaccatttattgaagctgttgtgtctggaatgaagtaa |
1193476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 1241378 - 1241225
Alignment:
| Q |
130 |
aaatcaatggagaaaatgggacgaccatttattgaagctgatgtatctggaatgaagtaaatgtcaaggtcatgcatatataattaagcaggcttgtact |
229 |
Q |
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| T |
1241378 |
aaatccatggagaaaatgggacgaccatttgttgaagcagttgtctctggaatgaaataaatgccaaatgtgtctatatataatgaagcatgcttgtact |
1241279 |
T |
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| Q |
230 |
atat--gttacaagttctctatatatgcatgcatggtgtgaaataaataaaacaatggat |
287 |
Q |
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| T |
1241278 |
atatacgttgcaagttctctat------atgcatgatgtgaaataaataaaacaatggat |
1241225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 297
Target Start/End: Complemental strand, 1252091 - 1251928
Alignment:
| Q |
130 |
aaatcaatggagaaaatgggacgaccatttattgaagctgatgtatctggaatgaagtaaatgtcaaggtcatgcatatataattaagcaggcttgtact |
229 |
Q |
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| T |
1252091 |
aaatccatggagaaaatgggacgaccatttgttgaagcagttgtctctggaatgaaataaatgccaaatgtgtctatatataatgaagcatgcttgtact |
1251992 |
T |
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| Q |
230 |
atat--gttacaagttctctatatatgcatgcatggtgtgaaataaataaaacaatggatatgtgtcttt |
297 |
Q |
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| T |
1251991 |
atatacgttgcaagttctctat------atgcatgatgtgaaataaataaaacaatgtatctgtggcttt |
1251928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 1241494 - 1241380
Alignment:
| Q |
34 |
atcatttaattaata----atgctaattatgtgacgattatattttatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaacc |
129 |
Q |
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| T |
1241494 |
atcatttaattaataggaaatgttaactatgtgacaattatattttat--gaaggttggctgaaactctctacaaggagaagcagttgcgtttgaaaacg |
1241397 |
T |
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| Q |
130 |
aaatcaatggagaaaat |
146 |
Q |
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| T |
1241396 |
aaatcaatggagaaaat |
1241380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 1252207 - 1252093
Alignment:
| Q |
34 |
atcatttaattaata----atgctaattatgtgacgattatattttatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaacc |
129 |
Q |
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| T |
1252207 |
atcatttaattaataggaaatgttaactatgtgacaattatattttat--gaaggttggctgaaactctctacaaggagaagcagttgcgtttgaaaacg |
1252110 |
T |
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| Q |
130 |
aaatcaatggagaaaat |
146 |
Q |
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| T |
1252109 |
aaatcaatggagaaaat |
1252093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 352
Target Start/End: Complemental strand, 1195356 - 1195262
Alignment:
| Q |
257 |
tgcatggtgtgaaataaataaaacaatggatatgtgtctttaatgagtgaatatttctagtttgttgcttttcctttaaaatgtattcggtcttgt |
352 |
Q |
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| T |
1195356 |
tgcatggtttgaaataaataaatcaatggatatgtgtctttcatga-tgagtgtttctactttgttgttttccttttcaaatgtatttggtcttgt |
1195262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 1195596 - 1195508
Alignment:
| Q |
48 |
aatgctaattatgtgacgattatattttatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaaccaaatcaat |
137 |
Q |
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| T |
1195596 |
aatgttaattatgtgacaatttttattt-tatgaaggttggctgagattctatacaaagagcagcagctgcgtttgaaaaccaaatcaat |
1195508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 1276281 - 1276196
Alignment:
| Q |
75 |
tatatgaaggttggctgaagttctgtataaggagaaacagctgcgtttgaaaaccaaatcaatggagaaaatgggacgaccattta |
160 |
Q |
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| T |
1276281 |
tatatgaaggttggctgatattctatacaaggagaaggagctgcgtttgaaaatgaaatcgatggaaaaaaggggacagccattta |
1276196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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