View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_high_13 (Length: 382)
Name: NF12899_high_13
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 13319937 - 13320280
Alignment:
| Q |
1 |
ttgcttataatagtgaccggatggagtaatattttagtattgtattcgtctctcatttgaagaagttgaaaaatcttaacgagtacaagtggaaactaat |
100 |
Q |
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| T |
13319937 |
ttgcttataatagtgactggagggagtaatattttagtattgtattcgtctctcatttgaagaagttgaaaaatcttaacgagtacaagtggaaactaat |
13320036 |
T |
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| Q |
101 |
attggttgtctttgaaggtaggaaaaacatgtgagaatatttatttat-attaatttataactataaattaaacaagataaaattcct--------cnnn |
191 |
Q |
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| T |
13320037 |
attggttgtctttgaaggtaggaaaaacatgtgagaatatttatttataattaatttataactataaattaaacaagataaaattccttttttttccctt |
13320136 |
T |
|
| Q |
192 |
nnnngagnnnnnnncttcatgcacttgtac-ttttattcaattttttccttgttccgggcacacattgaaaaatgcaccaaataatttactttcgtacct |
290 |
Q |
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| T |
13320137 |
cattgagaaaaaaacttcatgcacttgtactttttattcaattttttccttgttccgggcacacattggaaaatgcaccaaataatttactttcgtaact |
13320236 |
T |
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| Q |
291 |
agcaaagaaccatattttcagtatctgacacataaagagttatt |
334 |
Q |
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| T |
13320237 |
agcaaagaaccatcttttcagtatctgacacataaagggttatt |
13320280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 27 - 335
Target Start/End: Original strand, 13321382 - 13321697
Alignment:
| Q |
27 |
taatattttagtattgtattcgtctctcatttgaagaagttgaaaaatcttaacgagtacaagtggaaactaatattggttgtctttgaaggtaggaaaa |
126 |
Q |
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| T |
13321382 |
taatattttagtattgtattcgtctctcatttgaagaagttgaaaaatcttaacgagtacagttggaaactgatattggttgtctttgaaggtaggaaaa |
13321481 |
T |
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| Q |
127 |
acatgtgagaatatttatttatattaatttataactataaattaaacaagataaaattcct---------cnnnnnnngagnnnnnnncttcatgcactt |
217 |
Q |
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| T |
13321482 |
ccatgtgagaatatttatttatattaatttataactataaattaaacaagata--attcctttttttttcccttcattgagaagaaaacttcatgcactt |
13321579 |
T |
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| Q |
218 |
gtacttttattcaattttttccttgttccgggcacacattgaaaaatgcaccaaataatttactttcgtacctagcaaagaaccatattttcagtatctg |
317 |
Q |
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| T |
13321580 |
ttacttttattcaatttttttcttgttccaggcacacattggaaaatgcatcaaataatttattttcgtaactagcaaagaaccatcttttcggtgtctg |
13321679 |
T |
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| Q |
318 |
acacataaagagttattg |
335 |
Q |
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| T |
13321680 |
atgcataaagggttattg |
13321697 |
T |
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