View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_high_2 (Length: 469)
Name: NF12899_high_2
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_high_2 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 66 - 447
Target Start/End: Complemental strand, 3456465 - 3456084
Alignment:
| Q |
66 |
ctgtcacaggttcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcaggtatattacagtgagtattgtg |
165 |
Q |
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| T |
3456465 |
ctgtcacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcaggtatattacagtgagtattgtg |
3456366 |
T |
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| Q |
166 |
tttatttcttctttacctgacattacttgcaaaaaatcttggtgtatagcatgacatataattcaatacttccatgtcatgtgtaatagttaaattatat |
265 |
Q |
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| T |
3456365 |
tttatttcttctttacctgatattacttgcaaaaaaacttggtgtatggcttgtcatataattcaaaacttccatgttatgtgtaatggttaaattatat |
3456266 |
T |
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| Q |
266 |
attttctattgaagttttagttgattcatcattttggatgcgaaatgtgtttttgcaaatgttatgaatttttcaatctaaaaggccgactcagtgtcgt |
365 |
Q |
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| T |
3456265 |
atcttctatttaagttttagttgattcatcattttggatgctaaatttgtttttgcaaatgtaatgaatttttcaattttaaaggccgactcagtgttgt |
3456166 |
T |
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| Q |
366 |
aaactggaccgtagtatttaaagatgagttgtaagttgaaaccctaagtagctactctgcagtgagagacgaaaggactatt |
447 |
Q |
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| T |
3456165 |
aaagtggaccatagtatttaaacatgagttgtaatttgaaaacctaagtagctactctgcagtcagagacgaaaggactatt |
3456084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 3480852 - 3480741
Alignment:
| Q |
66 |
ctgtcacaggttcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcaggtatattacagtgagtattgtg |
165 |
Q |
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| T |
3480852 |
ctgtcacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttataggccatcaggtatactacaacgagtatttag |
3480753 |
T |
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| Q |
166 |
tttatttcttct |
177 |
Q |
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| T |
3480752 |
tttctttcttct |
3480741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 47649719 - 47649660
Alignment:
| Q |
18 |
gatattgtcgtggcttaggagctggaattaaacccctaaagggaaagtctgtcacaggtt |
77 |
Q |
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| T |
47649719 |
gatattgtcgtggcttaggagctggaattaaacccctaaagggaaagtctgtcacaggtt |
47649660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 48694358 - 48694426
Alignment:
| Q |
76 |
ttcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcagg |
144 |
Q |
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| T |
48694358 |
ttctgaagagagcagataatttcttgcattttatactccaaaatgctcctgttgttattggccatcagg |
48694426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 91877 - 91833
Alignment:
| Q |
18 |
gatattgtcgtggcttaggagctggaattaaacccctaaagggaa |
62 |
Q |
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| T |
91877 |
gatattgtcgtggcttgggagctggaattaaaaccctaaagggaa |
91833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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