View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_high_33 (Length: 229)
Name: NF12899_high_33
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 35914713 - 35914915
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35914713 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagataatgataaagttagatttatgaggttgacagttatattgcattattagtctt |
35914812 |
T |
|
| Q |
111 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
210 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35914813 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtcgatgcaagctgcggaacat |
35914912 |
T |
|
| Q |
211 |
agt |
213 |
Q |
| |
|
||| |
|
|
| T |
35914913 |
agt |
35914915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 35927678 - 35927878
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||| ||||| ||| ||| || ||||| |
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|
| T |
35927678 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataataataaagttagatttatgagattgtgagttacatttcatacttggtctt |
35927777 |
T |
|
| Q |
111 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
210 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
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| T |
35927778 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
35927877 |
T |
|
| Q |
211 |
a |
211 |
Q |
| |
|
| |
|
|
| T |
35927878 |
a |
35927878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 35921085 - 35921285
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||| | || | ||||| ||||||| ||| ||||||||| ||||||||||| | |
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|
| T |
35921085 |
catcatcaatccaagcattccctatctgaaatttttttaagtatagataataatgagattagaattatgagattgcgagttatatttcattattagtcat |
35921184 |
T |
|
| Q |
111 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||| |
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|
| T |
35921185 |
tcgaagtttgaacaacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtaaagaatagtggatgcaagttgaggaacat |
35921284 |
T |
|
| Q |
211 |
a |
211 |
Q |
| |
|
| |
|
|
| T |
35921285 |
a |
35921285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 35940058 - 35940254
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| ||| ||||| ||| |||||||| |||||| ||| | ||||||||||||||||||||| |
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|
| T |
35940058 |
catcatcaatccaagcattccctaactgaaattttgtat-gtacagataatga---agttagatatatgagattgtgatttatattgcattattagtctt |
35940153 |
T |
|
| Q |
111 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
210 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||| || ||||||| |
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|
| T |
35940154 |
ttgaagtttgatcaacatacagaaatgcctttgaggttaataatggtgttcttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacat |
35940253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 35910278 - 35910478
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||||||| ||| ||||| ||| ||| || ||||| |
|
|
| T |
35910278 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
35910377 |
T |
|
| Q |
111 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
210 |
Q |
| |
|
| ||||| ||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| ||||||| || ||||||| |
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|
| T |
35910378 |
ttgaagttggaaaatcatacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacat |
35910477 |
T |
|
| Q |
211 |
a |
211 |
Q |
| |
|
| |
|
|
| T |
35910478 |
a |
35910478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 35934492 - 35934691
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | ||| | ||| | || ||||||| | |||| | | | ||||||||||||||||||||||| |
|
|
| T |
35934492 |
catcatcaatccaagcattccctatctgaaaaatttgaa-gtacaaataatcatgaagttagttatatgtgatagtgagttatattgcattattagtctt |
35934590 |
T |
|
| Q |
111 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
210 |
Q |
| |
|
| ||| |||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||| || |||||||||||| ||||||| || ||||||| |
|
|
| T |
35934591 |
ttgaagattgatcaacatacagatatgcctttgaggttaatgatggttttgttatagagtttatggtggtgaagaatagtggatgcaagttgaggaacat |
35934690 |
T |
|
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