View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12899_high_5 (Length: 456)

Name: NF12899_high_5
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12899_high_5
NF12899_high_5
[»] chr5 (1 HSPs)
chr5 (1-441)||(13717662-13718102)
[»] chr6 (10 HSPs)
chr6 (1-423)||(29469691-29470109)
chr6 (222-429)||(29673509-29673718)
chr6 (299-429)||(29727528-29727659)
chr6 (222-429)||(29758946-29759155)
chr6 (269-429)||(29694934-29695095)
chr6 (273-429)||(28490039-28490196)
chr6 (273-429)||(29802449-29802606)
chr6 (369-429)||(28479018-28479078)
chr6 (369-429)||(29791473-29791533)
chr6 (25-57)||(29705866-29705898)
[»] chr3 (1 HSPs)
chr3 (180-429)||(615269-615519)
[»] chr8 (1 HSPs)
chr8 (222-429)||(12590214-12590423)
[»] scaffold0012 (2 HSPs)
scaffold0012 (222-429)||(238364-238574)
scaffold0012 (269-423)||(211669-211824)
[»] chr1 (2 HSPs)
chr1 (224-399)||(5921971-5922148)
chr1 (25-58)||(5921756-5921789)


Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 13718102 - 13717662
Alignment:
Q  1 tacttcaacccaggagttttgacgtatgatttcaattttacttgttccctttaaacacgataaagcacaaatcaaacaaaatacatgtacatatgttaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13718102 tacttcaacccaggagttttgacgtatgatttcaattttacttcttccttttaaacacgataaagcacaaatcaaacaaaataaatgtacatatgttaga 13718003  T
Q  101 acttcaacactcctatttagagaaattaacatattgacaatggggaaaaaaggttacgtgaacattagtaacattaatctaagttaaagatgaaaagcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  13718002 acttcaacactcctatttagagaaattaacatattgacaatggggaaaaaagataacgtgaacattagtaacattaatctaagttaaagatgaaaagcca 13717903  T
Q  201 aaccatattattactacttagtactcaccgcattttcttctaaaatttgaattatatcttttgaagcaataacctactgcgttttccagtatattccagt 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13717902 aaccatattattactacttagtactcaccgcattttcttttaaaatttgaattatatcttttgaagccataacctactgcgttttccagtatattccagt 13717803  T
Q  301 gattcttgtcttaaaatttctttttcatgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaccaacaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||     
T  13717802 gattcttgtcttaaaatttctttttcatgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaacagcac 13717703  T
Q  401 aataatttgatctttcatgatatcaccatttatgagcatga 441  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13717702 aataatttgatctttcatgatatcaccatttatgagcatga 13717662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 29470109 - 29469691
Alignment:
Q  1 tacttcaacccaggagttttgacgtatgatttcaattttacttgttccctttaaacacgataaagcacaaatcaaacaaaatacatgtacatatgttaga 100  Q
    |||||||| || |||| || ||| |||||||||||||||||||||||||||| | || || ||||||||||  |  |||||||||||||||||||||||     
T  29470109 tacttcaatccgggagcttggacatatgatttcaattttacttgttcccttttagcatgaaaaagcacaaaatac-caaaatacatgtacatatgttagt 29470011  T
Q  101 acttcaacactcctatttagagaaattaacatattgacaatggggaaaaaaggttacgtgaacattagtaacattaatctaagttaaagatgaaaagcca 200  Q
    |||||||| | |||||||| |||| || ||||||||  |||||||  ||| ||||| |||| ||||||||||||||||| || |||||||||||||| ||    
T  29470010 acttcaactcacctatttatagaatttgacatattg-taatgggg-gaaagggttaagtgagcattagtaacattaatcaaacttaaagatgaaaagaca 29469913  T
Q  201 aaccatattattactacttagtactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttccagtatattccag 299  Q
    ||||  |||  ||  || || ||||||||| |||||||||||||| ||||||||||||||| || | | ||||||||||||||||||||| || |||  |    
T  29469912 aacc--attcatatcac-tattactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaggatcttcagg 29469816  T
Q  300 tgattcttgtcttaaaatttcttt-ttcatgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaccaac 398  Q
    |||||||||||| | |||||||||   ||| || |||| ||||||||||||||  || | |||| ||  |||| |||| ||||||||||||||||| |||    
T  29469815 tgattcttgtctaacaatttctttccccatatcctctatcaaatcatgtaatgtcacgttaccagacatacttgttttaatgagagatttttccactaac 29469716  T
Q  399 aaaataatttgatctttcatgatat 423  Q
    | |  ||| ||||||||||||||||    
T  29469715 acatcaatgtgatctttcatgatat 29469691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 429
Target Start/End: Original strand, 29673509 - 29673718
Alignment:
Q  222 tactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttc 320  Q
    ||||||| | |||||||||||||| ||||||||||||||  |||  | |||||||||| |||||||||| || |||  ||| ||||||||| | ||||||    
T  29673509 tactcactgtattttcttctaaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttc 29673608  T
Q  321 tttttc-atgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaccaacaaaataatttgatctttcatg 419  Q
    |||| | || || |||||||||||||||||||  |||| |||| ||||| |||||||||||||| | |||||||| |||| | ||||||| |||||||||    
T  29673609 ttttcccatatcctctaccaaatcatgtaatgtcacattaccagactcatttatttttatgagatacttttccactaacacattaatttggtctttcatg 29673708  T
Q  420 atatcaccat 429  Q
     ||| |||||    
T  29673709 gtatgaccat 29673718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 299 - 429
Target Start/End: Original strand, 29727528 - 29727659
Alignment:
Q  299 gtgattcttgtcttaaaatttctttttc-atgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaccaa 397  Q
    |||| |||||||| | |||||||||| | || ||||||| ||||||||||||||||||||||||| || ||  |||||||||||||||||||||||| ||    
T  29727528 gtgactcttgtctaacaatttcttttcccatatcttctagcaaatcatgtaatgctacataaccaaacccatctatttttatgagagatttttccactaa 29727627  T
Q  398 caaaataatttgatctttcatgatatcaccat 429  Q
    || | |||| |||||||||||| |||||||||    
T  29727628 cacattaatgtgatctttcatgttatcaccat 29727659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 429
Target Start/End: Original strand, 29758946 - 29759155
Alignment:
Q  222 tactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttc 320  Q
    ||||||| | |||||||||||||| ||| |||||||| || |||  | |||| ||| |||||||||||| || ||   | ||||||||||| | ||||||    
T  29758946 tactcactgtattttcttctaaaacttgcattatatcattagaaaaccataatctagtgcgttttccaggatcttgaggcgattcttgtctaacaatttc 29759045  T
Q  321 tttttc-atgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaccaacaaaataatttgatctttcatg 419  Q
    |||  | || || |||||||||||||| ||||  |||| |||| ||||| ||||||||||||||||||||||||| |||| | |||| |||||||||| |    
T  29759046 tttacccatatcctctaccaaatcatgcaatgtcacattaccaaactcatttatttttatgagagatttttccactaacacattaatgtgatctttcacg 29759145  T
Q  420 atatcaccat 429  Q
    || |||||||    
T  29759146 atttcaccat 29759155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 269 - 429
Target Start/End: Original strand, 29694934 - 29695095
Alignment:
Q  269 ataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttctttttc-atgtcttctaccaaatcatgtaatgctacataaccatactc 367  Q
    |||||||| |||||||||||| || |||  |||||||| |||| | |||||||||  | || || |||| |||||||||||||| ||||| |||| |  |    
T  29694934 ataacctagtgcgttttccaggatcttcaggtgattctcgtctaacaatttctttccccatatcctctatcaaatcatgtaatgttacattaccagaaac 29695033  T
Q  368 acttatttttatgagagatttttccaccaacaaaataatttgatctttcatgatatcaccat 429  Q
     |||||||||||||||||||||||||| |||| |  ||| |||||||||||||||| |||||    
T  29695034 gcttatttttatgagagatttttccactaacacatcaatgtgatctttcatgatattaccat 29695095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 429
Target Start/End: Original strand, 28490039 - 28490196
Alignment:
Q  273 cctactgcgttttccagtatattccagtgattcttgtcttaaaatttctttttc-atgtcttctaccaaatcatgtaatgctacataaccatactcactt 371  Q
    ||||||||||||||||| || |||  |||| |||||||| | |||||||||  | || || ||||||||||| |||||||  | || |||| |||| |||    
T  28490039 cctactgcgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgtcagattaccagactcgctt 28490138  T
Q  372 atttttatgagagatttttccaccaacaaaataatttgatctttcatgatatcaccat 429  Q
    | ||||||||||||||||||||| ||   | |||| ||||||||||||||||||||||    
T  28490139 acttttatgagagatttttccactaatgcattaatgtgatctttcatgatatcaccat 28490196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 429
Target Start/End: Original strand, 29802449 - 29802606
Alignment:
Q  273 cctactgcgttttccagtatattccagtgattcttgtcttaaaatttctttttc-atgtcttctaccaaatcatgtaatgctacataaccatactcactt 371  Q
    ||||||||||||||||| || |||  |||| |||||||| | |||||||||  | || || ||||||||||| |||||||  | || |||| |||| |||    
T  29802449 cctactgcgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgtcagattaccagactcgctt 29802548  T
Q  372 atttttatgagagatttttccaccaacaaaataatttgatctttcatgatatcaccat 429  Q
    | ||||||||||||||||||||| ||   | |||| ||||||||||||||||||||||    
T  29802549 acttttatgagagatttttccactaatgcattaatgtgatctttcatgatatcaccat 29802606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 28479018 - 28479078
Alignment:
Q  369 cttatttttatgagagatttttccaccaacaaaataatttgatctttcatgatatcaccat 429  Q
    |||||||||||||||||||||||||| |||| |  ||| |||||||||||||||| |||||    
T  28479018 cttatttttatgagagatttttccactaacacatcaatgtgatctttcatgatattaccat 28479078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 29791473 - 29791533
Alignment:
Q  369 cttatttttatgagagatttttccaccaacaaaataatttgatctttcatgatatcaccat 429  Q
    |||||||||||||||||||||||||| |||| |  ||| |||||||||||||||| |||||    
T  29791473 cttatttttatgagagatttttccactaacacatcaatgtgatctttcatgatattaccat 29791533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 29705866 - 29705898
Alignment:
Q  25 tatgatttcaattttacttgttccctttaaaca 57  Q
    |||||||||||||||||||||||||| ||||||    
T  29705866 tatgatttcaattttacttgttccctataaaca 29705898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 180 - 429
Target Start/End: Complemental strand, 615519 - 615269
Alignment:
Q  180 taagttaaagatgaaaagccaaac----catattattactacttagtactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacc 274  Q
    ||||||||||||||||||||||||    ||||| |||| ||     ||||||| | |||||||| ||||| ||||||||||||||| |||| | ||||||    
T  615519 taagttaaagatgaaaagccaaactatccatatcattaata-----tactcacagtattttcttgtaaaacttgaattatatctttagaagaccataacc 615425  T
Q  275 tactgcgttttccagtatattccagtgattcttgtcttaaaatttctttttc-atgtcttctaccaaatcatgtaatgctacataaccatactcacttat 373  Q
     ||| || || || | || |||  ||||||||||||| | |||||||||  | || || |||||||||||||||||||  |||| |||| | ||||||||    
T  615424 gacttcgcttcccgggatcttcgggtgattcttgtctaacaatttctttccccatatcctctaccaaatcatgtaatgtcacattaccagaatcacttat 615325  T
Q  374 ttttatgagagatttttccaccaacaaaataatttgatctttcatgatatcaccat 429  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  615324 ttttatgagagatttttccaccaacacattaatgtgatctttcatgatatcaccat 615269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 222 - 429
Target Start/End: Complemental strand, 12590423 - 12590214
Alignment:
Q  222 tactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttc 320  Q
    ||||||| | |||||||||||||| |||||||| |||||| || | | |||||||||| |||||||||| || |||| ||||||||||||| |  |||||    
T  12590423 tactcacagtattttcttctaaaacttgaattaaatctttagaggaccataacctactacgttttccaggattttccggtgattcttgtctaactatttc 12590324  T
Q  321 tttttc-atgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaccaacaaaataatttgatctttcatg 419  Q
    |||  | || || |||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||||  | |||| | |||| ||||| ||||||    
T  12590323 tttccccatatcctctaccaaatcatgtaatgtcacattaccagactcacttatttttatgagagatttttctgctaacacattaatgtgatcattcatg 12590224  T
Q  420 atatcaccat 429  Q
    ||||||||||    
T  12590223 atatcaccat 12590214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 222 - 429
Target Start/End: Original strand, 238364 - 238574
Alignment:
Q  222 tactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttc 320  Q
    ||||||||| |||||||||||||| ||||||||||||||| || | | ||||||||||||||||||||  || ||   |||| ||| |||| | ||||      
T  238364 tactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaagatttttaggtgaatctcgtctaacaattca 238463  T
Q  321 tttttc--atgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaccaacaaaataatttgatctttcat 418  Q
     ||| |  || || ||||||||||||||||||   |||| |||| ||||||||||||||| ||||||||||||||| |||| | |||| |||||||||||    
T  238464 ctttccccatatcctctaccaaatcatgtaatctcacattaccagactcacttatttttaggagagatttttccactaacacattaatgtgatctttcat 238563  T
Q  419 gatatcaccat 429  Q
    ||| |||||||    
T  238564 gatgtcaccat 238574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 423
Target Start/End: Original strand, 211669 - 211824
Alignment:
Q  269 ataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttctttttc-atgtcttctaccaaatcatgtaatgctacataaccatactc 367  Q
    |||| |||||||||||||||| || |||  ||||||||||||| | |||||||||  | || ||||||||||||||||| | ||  |||| |||| ||||    
T  211669 ataatctactgcgttttccaggattttcaggtgattcttgtctaacaatttctttccccatatcttctaccaaatcatgcattgtcacattaccagactc 211768  T
Q  368 acttatttttatgagagatttttccaccaacaaaataatttgatctttcatgatat 423  Q
    |||||| |||||||||||||||||||| |||| | |||| | ||||||||||||||    
T  211769 acttatctttatgagagatttttccactaacacattaatgttatctttcatgatat 211824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 399
Target Start/End: Original strand, 5921971 - 5922148
Alignment:
Q  224 ctcaccgcattttcttctaaaatttgaattatatcttttgaagca--ataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttct 321  Q
    ||||||| |||||||||||||| ||||| ||||||||  |  |||  ||||||||||||| |||||||  | || | ||||||||||||| | |||||||    
T  5921971 ctcaccgtattttcttctaaaacttgaactatatcttcagg-gcaccataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttct 5922069  T
Q  322 ttt-tcatgtcttctaccaaatcatgtaatgctacataaccatactcacttatttttatgagagatttttccaccaaca 399  Q
    |||  |||||| |||| || ||||||||||| |||   || | ||||  |||| |||||||||||||| ||||| ||||    
T  5922070 tttcccatgtcctctatcacatcatgtaatgttacgctacgagactcggttatctttatgagagatttctccactaaca 5922148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 5921756 - 5921789
Alignment:
Q  25 tatgatttcaattttacttgttccctttaaacac 58  Q
    |||||||||||||||||||||||||||| |||||    
T  5921756 tatgatttcaattttacttgttcccttttaacac 5921789  T

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