View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12899_low_1 (Length: 545)

Name: NF12899_low_1
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12899_low_1
NF12899_low_1
[»] chr3 (17 HSPs)
chr3 (165-444)||(8431406-8431686)
chr3 (19-124)||(48531600-48531706)
chr3 (165-308)||(43073034-43073178)
chr3 (165-311)||(31525360-31525507)
chr3 (165-302)||(28934724-28934861)
chr3 (171-308)||(10454279-10454422)
chr3 (181-317)||(44656229-44656369)
chr3 (189-308)||(47820897-47821022)
chr3 (171-308)||(9358743-9358883)
chr3 (165-302)||(52076066-52076209)
chr3 (22-81)||(48528882-48528941)
chr3 (185-308)||(53349401-53349527)
chr3 (165-302)||(20701152-20701292)
chr3 (178-302)||(28956952-28957079)
chr3 (171-302)||(42881885-42882019)
chr3 (189-308)||(46750212-46750333)
chr3 (249-308)||(55166895-55166955)
[»] chr1 (14 HSPs)
chr1 (181-386)||(31833817-31834019)
chr1 (166-311)||(12172951-12173097)
chr1 (165-396)||(19472716-19472944)
chr1 (190-308)||(46757306-46757425)
chr1 (171-308)||(26990601-26990739)
chr1 (165-302)||(8462958-8463097)
chr1 (189-308)||(42442019-42442142)
chr1 (171-308)||(47028931-47029072)
chr1 (165-308)||(38548673-38548821)
chr1 (183-302)||(41955891-41956016)
chr1 (218-308)||(43268645-43268739)
chr1 (171-308)||(26384960-26385100)
chr1 (165-302)||(28447722-28447863)
chr1 (166-307)||(43460698-43460848)
[»] chr7 (14 HSPs)
chr7 (171-308)||(46691839-46691981)
chr7 (165-302)||(30655586-30655727)
chr7 (165-302)||(22197675-22197816)
chr7 (165-302)||(22240005-22240146)
chr7 (182-302)||(36615808-36615927)
chr7 (166-311)||(31424761-31424912)
chr7 (165-302)||(1039051-1039191)
chr7 (189-302)||(49035865-49035983)
chr7 (183-305)||(41702867-41702992)
chr7 (193-302)||(33320710-33320817)
chr7 (342-396)||(30655761-30655815)
chr7 (171-311)||(32678937-32679083)
chr7 (165-242)||(42598053-42598130)
chr7 (171-308)||(43397640-43397781)
[»] chr2 (6 HSPs)
chr2 (178-314)||(38908663-38908800)
chr2 (181-308)||(41419617-41419748)
chr2 (171-308)||(14732334-14732473)
chr2 (190-308)||(41378216-41378332)
chr2 (165-302)||(22649053-22649193)
chr2 (189-242)||(43356750-43356803)
[»] chr8 (14 HSPs)
chr8 (165-308)||(40930818-40930961)
chr8 (165-301)||(13959207-13959347)
chr8 (169-308)||(24200614-24200753)
chr8 (171-308)||(25829259-25829399)
chr8 (164-308)||(5200469-5200615)
chr8 (172-308)||(22839250-22839391)
chr8 (165-308)||(38086402-38086551)
chr8 (235-302)||(10124866-10124935)
chr8 (165-308)||(30836116-30836272)
chr8 (165-214)||(7845135-7845184)
chr8 (166-242)||(44362918-44362994)
chr8 (79-140)||(38542725-38542786)
chr8 (165-229)||(584123-584187)
chr8 (249-308)||(7845080-7845138)
[»] chr4 (11 HSPs)
chr4 (181-302)||(16572074-16572198)
chr4 (166-300)||(47571560-47571694)
chr4 (165-308)||(32183275-32183425)
chr4 (171-267)||(15186975-15187072)
chr4 (79-148)||(5341724-5341793)
chr4 (171-305)||(55133102-55133233)
chr4 (171-308)||(25641263-25641407)
chr4 (171-309)||(16662301-16662441)
chr4 (171-307)||(42390766-42390906)
chr4 (165-215)||(45511390-45511440)
chr4 (106-165)||(25222218-25222278)
[»] chr5 (10 HSPs)
chr5 (189-308)||(23172985-23173107)
chr5 (183-308)||(22887211-22887337)
chr5 (165-308)||(9931785-9931935)
chr5 (183-317)||(25539810-25539947)
chr5 (165-302)||(10431063-10431204)
chr5 (182-302)||(819134-819254)
chr5 (166-308)||(3677779-3677924)
chr5 (165-293)||(42241577-42241708)
chr5 (250-302)||(2292168-2292222)
chr5 (165-223)||(9597742-9597800)
[»] chr6 (8 HSPs)
chr6 (165-302)||(33112703-33112844)
chr6 (171-308)||(10246910-10247049)
chr6 (164-396)||(11546685-11546912)
chr6 (174-309)||(6575720-6575860)
chr6 (166-308)||(15859093-15859244)
chr6 (165-396)||(34761080-34761306)
chr6 (249-308)||(33984753-33984814)
chr6 (180-223)||(12754422-12754465)
[»] scaffold0209 (1 HSPs)
scaffold0209 (165-229)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (167-223)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 165 - 444
Target Start/End: Original strand, 8431406 - 8431686
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 264  Q
    ||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431406 tttttttttttgaaacggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 8431505  T
Q  265 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggac-acaaaaataatgacgcagacatatacaaa 363  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||    
T  8431506 gcaacaaaacaccggctcgaacaaaaaccccttaaaaaccaccccaacactaaggcactaactaccggtcaaaaaaaaaaatgacgcagacatatacaaa 8431605  T
Q  364 tgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactgcagcaccacaccaaaaagacagcagcaacc 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8431606 tgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactacagcaccacaccaaaaagacagcagcaacc 8431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 48531706 - 48531600
Alignment:
Q  19 aacctgttcacctatcacgtcttgtttgcaagagcgtt-gtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtgg 117  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531706 aacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtgg 48531607  T
Q  118 tgttggt 124  Q
    |||||||    
T  48531606 tgttggt 48531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 43073034 - 43073178
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggt 263  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || ||||||||| | || ||||||||||||||||    
T  43073034 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaaaagaatacaaggggaaatcggt 43073133  T
Q  264 tgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    ||||  |||||||||||||||||||||||||||||||||||||||    
T  43073134 tgccttaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 165 - 311
Target Start/End: Complemental strand, 31525507 - 31525360
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 264  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| ||||||| ||||| || ||||||||| | | |||||||||||||||||    
T  31525507 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggtt 31525408  T
Q  265 gccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 311  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  31525407 gccacacaaacaacggctcgaacaaaaaccccttaaaaaccaccctaa 31525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 28934724 - 28934861
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggt 263  Q
    ||||| ||||||||   |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| |||||  || ||||||||||||||||    
T  28934724 tttttttttttgaattagcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggt 28934823  T
Q  264 tgccacaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  28934824 tgccac-aaacaccggctcgaacaaaaaccccttaaaaa 28934861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 10454422 - 10454279
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-----aaaaaataaacacaaggggaaatcggttg 265  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||  ||||||| |||||||| |||     |||||||| | ||||||||||||||||||    
T  10454422 tttttgaaatggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaaaaaaaatacatacaaggggaaatcggttg 10454323  T
Q  266 ccacaa-aacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    |||||| ||  ||||||| |||||||||||||||||||||||||    
T  10454322 ccacaagaaagccggctcaaacaaaaaccccttaaaaaccaccc 10454279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 181 - 317
Target Start/End: Original strand, 44656229 - 44656369
Alignment:
Q  181 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac---acaaggggaaatcggttgccacaaaacac 276  Q
    ||||||| |||||||||||| ||||||||||||||||||| || |||||||| |||| ||||| ||||   ||||||| ||||||||||||| | |||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggagaaaaaaaaaccatacaagggaaaatcggttgccatataacac 44656328  T
Q  277 cggctcgaacaaaaaccccttaaaaaccaccctaacactaa 317  Q
     | |||||||||||| ||||||||||||||||||| |||||    
T  44656329 agactcgaacaaaaatcccttaaaaaccaccctaaaactaa 44656369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 189 - 308
Target Start/End: Complemental strand, 47821022 - 47820897
Alignment:
Q  189 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcg 283  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||    |||||||| | | |||||||||||||||||| || |||||||||||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggctcg 47820923  T
Q  284 aacaaaaacccc-ttaaaaaccaccc 308  Q
    |||||||||||| |||||||||||||    
T  47820922 aacaaaaacccctttaaaaaccaccc 47820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 9358743 - 9358883
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcggttgccac 269  Q
    |||||||| |||||||| ||||||| |||| |||||||||| ||| | ||||| ||||| || |||| |||| || | | |||||||||||||||||| |    
T  9358743 tttttgaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgc 9358842  T
Q  270 a-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 308  Q
    | ||||||||||||||||||||||||| |||||||||||||    
T  9358843 acaaacaccggctcgaacaaaaacccctttaaaaaccaccc 9358883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 52076209 - 52076066
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga------aaaaataaacacaaggggaaa 258  Q
    ||||| |||||||| |||||||| |||| ||||||| |||||||||| ||| ||||||| |||||||| ||||      ||||||| | |||||||| ||    
T  52076209 tttttttttttgaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggagaaaaaaaaaatacaaacaaggggtaa 52076110  T
Q  259 tcggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    |||||||||| ||||||   ||||||||||||||||||||||||    
T  52076109 tcggttgccataaaacaaacgctcgaacaaaaaccccttaaaaa 52076066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 48528941 - 48528882
Alignment:
Q  22 ctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagatatgagaagctaa 81  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48528941 ctgttcacctatcacgtcttgtttgcaagagcattgtatttatgagatatgagaagctaa 48528882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 185 - 308
Target Start/End: Complemental strand, 53349527 - 53349401
Alignment:
Q  185 aaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccggct 281  Q
    |||||||||||||||| |||| | ||||||| ||||||| || || || ||| |||| ||||||  |||||| |||||||||||| || |||||||||||    
T  53349527 aaaaattattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggct 53349428  T
Q  282 cgaacaaaaaccccttaaaaaccaccc 308  Q
    | |||||||||||||||||||||||||    
T  53349427 caaacaaaaaccccttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 20701292 - 20701152
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcg 261  Q
    ||||| ||||| || | |||||| ||||||||||||  ||||||| ||||| ||||||| |||||||| || |   ||||||| | ||||||||||||||    
T  20701292 tttttttttttaaatcagcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcg 20701193  T
Q  262 gttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
     |||||||| |||  ||||||||||||||||||||||||||    
T  20701192 attgccacacaactacggctcgaacaaaaaccccttaaaaa 20701152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 178 - 302
Target Start/End: Complemental strand, 28957079 - 28956952
Alignment:
Q  178 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaac 274  Q
    |||| ||||| |||||||||||| ||| ||||||||||  |||| | |||||||| ||  ||||| ||||| |  |||||||||||||||||||| ||||    
T  28957079 aacgacaaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaac 28956980  T
Q  275 accggctcgaacaaaaaccccttaaaaa 302  Q
    ||||||||||||||||||||||| ||||    
T  28956979 accggctcgaacaaaaacccctttaaaa 28956952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 42882019 - 42881885
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca----caaggggaaatcggttgc 266  Q
    ||||| || |||||||| ||||||| |||| |||| ||| ||||||||||||| ||||||||  |||||||| | |||    ||||||||||||| ||||    
T  42882019 tttttaaatcggcaaaatattatta-ccaacaagctcgtacaagatgcactaaaaagctcgggaggaaaaaaaacacaaatacaaggggaaatcgattgc 42881921  T
Q  267 cacaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    ||||| |||||||||| ||||||||| |||||||||    
T  42881920 cacaatacaccggctcaaacaaaaacgccttaaaaa 42881885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 308
Target Start/End: Complemental strand, 46750333 - 46750212
Alignment:
Q  189 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatg---gaaaaaataaacacaaggggaaatcggttgccacaaaacaccggctcgaa 285  Q
    |||||||||||| ||  | || ||||||||||||| |||||||| ||   ||||||  ||| |||| || |||||||||||| ||||||||||| |||||    
T  46750333 attattaaccaacaaatctgtacaagatgcactaataagctcgggtgaaagaaaaagaaaatacaaaggaaaatcggttgccgcaaaacaccggttcgaa 46750234  T
Q  286 caaaaaccccttaaaaaccaccc 308  Q
    |||||| ||||||||||||||||    
T  46750233 caaaaa-cccttaaaaaccaccc 46750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 55166895 - 55166955
Alignment:
Q  249 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    ||||||||||||||||||| || ||||   |||||||||||||||||||||||||||||||    
T  55166895 caaggggaaatcggttgccgcacaaactttggctcgaacaaaaaccccttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 181 - 386
Target Start/End: Complemental strand, 31834019 - 31833817
Alignment:
Q  181 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggc 280  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||||||||| || ||||||   | ||||||| ||||||||||||||| |||||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaa---atacaagggaaaatcggttgccacataacaccggc 31833923  T
Q  281 tcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatgacaatccgcaagcat 380  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  31833922 tcgaacaaaaaccccttaaaaaccaccccaacactaaggcacaaactaccagtcacaaaagtaatgacgcagacatatacaaatggcaatccgcaagcat 31833823  T
Q  381 acccct 386  Q
    ||||||    
T  31833822 acccct 31833817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 166 - 311
Target Start/End: Complemental strand, 12173097 - 12172951
Alignment:
Q  166 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttg 265  Q
    |||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||    
T  12173097 ttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttg 12172998  T
Q  266 ccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 311  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||    
T  12172997 ccacacaaacatcagctcgaacaaaaaccccttaaaaaccaccctaa 12172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 165 - 396
Target Start/End: Complemental strand, 19472944 - 19472716
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcgg 262  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||  ||||||||| | | ||||||||||| |    
T  19472944 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcag 19472845  T
Q  263 ttgccaca-aaacaccggctcgaacaaaaa-ccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatac 360  Q
    |||||| | |||| |||||||||||||||| ||| |||||||||||||  | ||||||| ||  ||       ||||| | ||||||||||| |||||||    
T  19472844 ttgccatacaaactccggctcgaacaaaaatccctttaaaaaccacccataaactaaggaacacac-------cacaagagtaatgacgcaggcatatac 19472752  T
Q  361 aaatgacaatccgcaagcatacccctgcatcaacac 396  Q
    || |||||  || |||||||||||||||||||||||    
T  19472751 aagtgacagaccacaagcatacccctgcatcaacac 19472716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 46757425 - 46757306
Alignment:
Q  190 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaa-aacaccggctcgaacaa 288  Q
    ||||||||||| |||||||||||||||||||||| |||||| | |||||||||  || | |||||||||||| ||||||||| |||||| ||||||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaaacaatataaggggaaatcgattgccacaataacaccagctcgaacaa 46757326  T
Q  289 aaaccccttaaaaaccaccc 308  Q
    |||||| |||||||||||||    
T  46757325 aaaccctttaaaaaccaccc 46757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 26990739 - 26990601
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 270  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||| |||||| ||||| ||    
T  26990739 tttttgaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaagggaaaatcgattgccgca 26990640  T
Q  271 -aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
     || ||||||||| |||||||| ||||||||||||||||    
T  26990639 caagcaccggctcaaacaaaaatcccttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 8462958 - 8463097
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcgg 262  Q
    ||||| ||||||||| || |||| |||||||||||| |||| ||||||||| |||||||  ||||||| ||  ||||||||| | ||||||| |||||||    
T  8462958 tttttttttttgaaatgg-aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcgg 8463056  T
Q  263 ttgccac-aaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  8463057 ttgccacaaaaacgtcggctcgaacaaaaaccccttaaaaa 8463097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 189 - 308
Target Start/End: Original strand, 42442019 - 42442142
Alignment:
Q  189 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgccac-aaaacaccggctcga 284  Q
    |||||||||||| ||| |||||||||| ||||||| |||||||| || |||||| ||   | |||| ||||||||||||||||  ||||||||| |||||    
T  42442019 attattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgactcga 42442118  T
Q  285 acaaaaaccccttaaaaaccaccc 308  Q
    ||||||||||||||||||||||||    
T  42442119 acaaaaaccccttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 47029072 - 47028931
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-----taaacacaaggggaaatcggttg 265  Q
    ||||||||||||| ||| ||||  |||||| |||  ||||||||| ||| ||| |||||||| |||||||||     |||| ||||||||||||||||||    
T  47029072 tttttgaaacggccaaatatta--aaccaacaagttcgtgcaagacgcattaataagctcgggtggaaaaaaaaacataaatacaaggggaaatcggttg 47028975  T
Q  266 ccacaaaa-caccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    || ||||| |||||||||||||||||||||||||||||| ||||    
T  47028974 ccgcaaaaacaccggctcgaacaaaaaccccttaaaaactaccc 47028931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 38548821 - 38548673
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaaca--caaggggaaatc 260  Q
    ||||| |||||||| |||||||| |||||||||||| || ||||||||||| ||||||| |||||||| |||  |||||| |||||  ||||||||||||    
T  38548821 tttttttttttgaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaaaaaaaaacaagcaaggggaaatc 38548722  T
Q  261 ggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    |||||||| | |||    ||||||||||||  |||||||||||||||||    
T  38548721 ggttgccatacaaaatttggctcgaacaaaccccccttaaaaaccaccc 38548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 41955891 - 41956016
Alignment:
Q  183 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-----acacaaggggaaatcggttgccacaa-aacac 276  Q
    ||||| |||||||||||| ||   |||||||||| |||||| ||||| ||||||| |||| ||     | ||||||||||||||||||||| || |||||    
T  41955891 caaaatattattaaccaacaaattcgtgcaagatacactaataagcttggatggagaaaaaaactaaaatacaaggggaaatcggttgccataataacac 41955990  T
Q  277 cggctcgaacaaaaaccccttaaaaa 302  Q
    ||||||||||||||| ||||||||||    
T  41955991 cggctcgaacaaaaatcccttaaaaa 41956016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 308
Target Start/End: Original strand, 43268645 - 43268739
Alignment:
Q  218 cactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 308  Q
    |||||| |||||||| |||| |||| ||||| |  ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  43268645 cactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 26385100 - 26384960
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgcc 267  Q
    |||||||||| | |||| |||||||||| | |||||||| ||||| || |||| ||||| || ||||||||| ||   | |||| ||||||||||||| |    
T  26385100 tttttgaaacagtaaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtggaaaaaaaaatacaaacaaagggaaatcggttgtc 26385002  T
Q  268 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    | | ||||||| |||| ||||||| |||||||||||||||||    
T  26385001 atacaaacaccagctcaaacaaaacccccttaaaaaccaccc 26384960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 28447863 - 28447722
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcg 261  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||  |||  || |||||| ||   | ||||||| ||||||    
T  28447863 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataaattcgagtgaaaaaaaaaagacaaacaagggaaaatcg 28447764  T
Q  262 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    ||||| | | ||||| | || |||||||||||| ||||||||    
T  28447763 gttgcaatataaacatcagcacgaacaaaaacctcttaaaaa 28447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 307
Target Start/End: Complemental strand, 43460848 - 43460698
Alignment:
Q  166 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg----gaaaaaataaac--acaaggggaaat 259  Q
    |||| |||||||| || ||||| |||||||||||| ||| | |||| ||| ||||||| |||||  | ||    ||||||| ||||  | ||||||||||    
T  43460848 ttttttttttgaatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaat 43460749  T
Q  260 cggttgcca--caaaacaccggctcgaacaaaaacccctt-aaaaaccacc 307  Q
    ||||||| |  |||||||| | |||||||||||||||||| ||||||||||    
T  43460748 cggttgcgatacaaaacactgactcgaacaaaaaccccttcaaaaaccacc 43460698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 46691839 - 46691981
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 266  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||    |||||||| | |||||||||||||||||||    
T  46691839 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgc 46691938  T
Q  267 caca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  46691939 cacataaacaccggctcgaacaaaaaccccttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 30655586 - 30655727
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcgg 262  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||||||||||||    
T  30655586 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcgg 30655685  T
Q  263 ttgc--cacaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    ||||  ||||||| | || |||||||||||||| ||||||||    
T  30655686 ttgccacacaaaatatcgactcgaacaaaaacctcttaaaaa 30655727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 22197816 - 22197675
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaat 259  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     |||||||||||    
T  22197816 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaat 22197718  T
Q  260 cggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    || || ||||||||||||| |||||||||||||||||||||||    
T  22197717 cgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22197675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 22240005 - 22240146
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaat 259  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     |||||||||||    
T  22240005 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaat 22240103  T
Q  260 cggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    || || ||||||||||||| |||||||||||||||||||||||    
T  22240104 cgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22240146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 36615808 - 36615927
Alignment:
Q  182 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggct 281  Q
    |||||| ||||||| |||| |||||||||||||| ||||||| |||||||| |||||||||  || |||||||||||||||||||||| |||| || |||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaacaaaacaaggggaaatcggttgccac-aaactccagct 36615906  T
Q  282 cgaacaaaaaccccttaaaaa 302  Q
    ||||||||||||| |||||||    
T  36615907 cgaacaaaaaccctttaaaaa 36615927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 166 - 311
Target Start/End: Original strand, 31424761 - 31424912
Alignment:
Q  166 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcggt 263  Q
    |||| |||||||| |||||||| |||||||||||| || |||||||||||  |||||| ||||| || |||| |||| ||||  | ||||||||||||||    
T  31424761 ttttttttttgaagcggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggt 31424860  T
Q  264 tgcca--caaaacaccggctcgaacaaaaacccctt--aaaaaccaccctaa 311  Q
    |||||  | |||||||||||||| ||||||||||||  ||||||||||||||    
T  31424861 tgccattcgaaacaccggctcgatcaaaaacccctttaaaaaaccaccctaa 31424912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 1039051 - 1039191
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcgg 262  Q
    ||||| ||||| ||||||||||| |||||||||| | |||||||||||||| ||||||| |||||||| |||| |||| ||||  ||||||| |||||||    
T  1039051 tttttttttttcaaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtggataaaaaaaacaaacaagggaaaatcgg 1039150  T
Q  263 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    |||| | | ||||   |||||||||||||||||||||||||    
T  1039151 ttgcaatacaaactttggctcgaacaaaaaccccttaaaaa 1039191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 49035865 - 49035983
Alignment:
Q  189 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa----acacaaggggaaatcggttgccaca-aaacaccggctcg 283  Q
    |||||||||||| ||| |||| ||||| ||||||| |||||||| |||| |||| ||    | ||||||||||||||||||||||| ||||||||| |||    
T  49035865 attattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggttcg 49035964  T
Q  284 aacaaaaaccccttaaaaa 302  Q
    |||||||||||||||||||    
T  49035965 aacaaaaaccccttaaaaa 49035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 41702992 - 41702867
Alignment:
Q  183 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccgg 279  Q
    ||||| ||||| ||||||  ||||||||||||  ||||||| ||| | || |||| |||| |||||  ||||||||| ||||||||| || |||||||||    
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  280 ctcgaacaaaaaccccttaaaaacca 305  Q
    ||||||||||||||||||||||||||    
T  41702892 ctcgaacaaaaaccccttaaaaacca 41702867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 33320817 - 33320710
Alignment:
Q  193 ttaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaaaaa 291  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||| |||   ||| |||||||||||| |||||||  | ||||||||||||||||||||     
T  33320817 ttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaa---aaaaacaaggggaaattggttgccttacaaacaccggctcgaacaaaac 33320721  T
Q  292 ccccttaaaaa 302  Q
    |||||||||||    
T  33320720 ccccttaaaaa 33320710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 30655761 - 30655815
Alignment:
Q  342 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 396  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||    
T  30655761 taatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacac 30655815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 32679083 - 32678937
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-----gaaaaaataaacacaaggggaaatcggttg 265  Q
    ||||| ||||||| |||  ||||||||||| |||||||||||||| ||||||| |||||||  ||      |||||| ||| ||||||  |||||| |||    
T  32679083 ttttttaaacggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctcgagtgaaaaaaaaaaaaaaaatacaaggaaaaatcgattg 32678984  T
Q  266 ccac-aaaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 311  Q
    || | |||| || |||| |||||||||||||||||||||||| ||||    
T  32678983 ccgctaaaatactggctggaacaaaaaccccttaaaaaccactctaa 32678937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 42598130 - 42598053
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 242  Q
    ||||| ||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| ||||| || |||| ||||    
T  42598130 tttttttttttaaaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggagaaaa 42598053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 43397781 - 43397640
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca------caaggggaaatcggtt 264  Q
    |||||||| ||||||| | ||||||||||| || ||||||||||| ||||||| ||||| || || |||||| ||| |      ||| || ||||| |||    
T  43397781 tttttgaatcggcaaata-ttattaaccaataaacccgtgcaagaagcactaa-aagcttgggtgaaaaaaaaaaaaaaacatacaaaggaaaatctgtt 43397684  T
Q  265 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    ||||||||||| | |||||||||||||||| | |||||||||||    
T  43397683 gccacaaaacaactgctcgaacaaaaacccttaaaaaaccaccc 43397640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 38908800 - 38908663
Alignment:
Q  178 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-taaacacaaggggaaatcggttgccacaaaacac 276  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||| || |||||| |||| ||||||| |||||||| ||||||||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaaaataaatacaagggaaaatcggtagccacaaaacac 38908701  T
Q  277 cggctcgaacaaaaaccccttaaaaaccaccctaacac 314  Q
    ||| |||||||||||||||||||||||||||| |||||    
T  38908700 cggttcgaacaaaaaccccttaaaaaccaccccaacac 38908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 41419748 - 41419617
Alignment:
Q  181 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgccacaa-aacac 276  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||   |||||| ||| ||||||||||||||||||||| || |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  277 cggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    || |||||||||||||||||||||||||||||    
T  41419648 cgactcgaacaaaaaccccttaaaaaccaccc 41419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 14732334 - 14732473
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat-ggaaaaaataaacacaaggggaaatcggttgccac 269  Q
    ||||||||| ||||||| |||||||||||| |||||||||| || |||||||| |||||||| | ||||||||  || ||||||||||||||||| || |    
T  14732334 tttttgaaaaggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaaaaataatacaaggggaaatcggttaccgc 14732433  T
Q  270 -aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
     |||| ||| ||||||||||||||||||||||||||||||    
T  14732434 aaaaataccagctcgaacaaaaaccccttaaaaaccaccc 14732473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 308
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  190 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaa 288  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    ||| ||||||||||||||||||||| |||| |||||||||| ||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaat---aca-aaggggaaatcggttgccacacaaactccggctcgaataa 41378311  T
Q  289 aaacccc-ttaaaaaccaccc 308  Q
    ||||||| |||||||||||||    
T  41378312 aaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 22649053 - 22649193
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggt 263  Q
    ||||| |||||||| ||||||||  ||||||||||| |||||||||||||| | ||||| ||||| || | || ||||| | | | ||||||||||||||    
T  22649053 tttttttttttgaagcggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagagaaaaaaacaaagaaggggaaatcggt 22649152  T
Q  264 tgcca--caaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    |||||  | ||||||||||| || |||||||||||| ||||    
T  22649153 tgccattccaaacaccggcttgatcaaaaacccctttaaaa 22649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 43356803 - 43356750
Alignment:
Q  189 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 242  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||| || ||||||    
T  43356803 attattaaccaataagtccgtgcaagatgcactaataagttcgggtgaaaaaaa 43356750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 40930818 - 40930961
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-aaaaaataaacacaaggggaaatcggt 263  Q
    ||||| ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||||| | ||||||||||||||||    
T  40930818 tttttttttttgaaatggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggt 40930917  T
Q  264 tgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    || ||| ||||| |||||||||||||||| |||||||||||||||    
T  40930918 tgtcac-aaacaacggctcgaacaaaaactccttaaaaaccaccc 40930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 165 - 301
Target Start/End: Original strand, 13959207 - 13959347
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcg 261  Q
    ||||| ||||||||||||||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| |||   |||||||| | |||| || ||||||    
T  13959207 tttttttttttgaaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaaaaaatacaaacaaaggaaaatcg 13959306  T
Q  262 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaa 301  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  13959307 gttgccacataaacaccggctcaaacaaaaaccccttaaaa 13959347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 24200614 - 24200753
Alignment:
Q  169 tatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcca 268  Q
    ||||||| || |||||||| |||||||| ||| ||| |||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||||     
T  24200614 tattttttaatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaaggggaaatcggttgccg 24200713  T
Q  269 c-aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    | |||||||||||||||||||||| | ||||||||||||||    
T  24200714 caaaaacaccggctcgaacaaaaa-cacttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 25829259 - 25829399
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgcc 267  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | ||||||||||||||||| ||    
T  25829259 tttttgaatcggcaaata-ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaaatacaaacaaggggaaatcggtttcc 25829357  T
Q  268 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
      | ||||||||||| ||| ||||||||||||||||||||||    
T  25829358 ctataaacaccggcttgaataaaaaccccttaaaaaccaccc 25829399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 164 - 308
Target Start/End: Original strand, 5200469 - 5200615
Alignment:
Q  164 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcgg 262  Q
    |||||| ||||| || |||||||| |||||||||||| ||| ||||||||||  |||||| ||| | || |||| |||| || | ||||||| |||||||    
T  5200469 cttttttttttttaatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcgg 5200568  T
Q  263 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||    
T  5200569 ttgccgcacaaacaccggctcgaacaaaaaccccttaaaaatcaccc 5200615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 22839391 - 22839250
Alignment:
Q  172 ttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga--aaaaataaacacaaggggaaatcggttgcc-- 267  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||| |||||||||  ||||| | | | ||| ||||||||||||||      
T  22839391 ttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccat 22839292  T
Q  268 acaaaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 308  Q
    | |||||| ||||||||||||||| ||| |||||||||||||    
T  22839291 ataaaacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 38086402 - 38086551
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcg 261  Q
    ||||| |||| ||| | |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | | ||||| ||||||    
T  38086402 ttttttttttagaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcg 38086501  T
Q  262 gttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 308  Q
    ||||||| | |||| | ||||||||||||||||||||  |||||||||||    
T  38086502 gttgccatacaaactctggctcgaacaaaaacccctttaaaaaaccaccc 38086551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 10124935 - 10124866
Alignment:
Q  235 ggaaaaaataaacacaaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    |||||||| | | ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  10124935 ggaaaaaaaacaaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 10124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 30836116 - 30836272
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaac----aagctcggatgga-------aaaaataaacacaagg 253  Q
    ||||| |||||||| |||||||| |||||||||||| |||| ||||| ||| |||||||     |||||||||||||       ||||| ||| | ||||    
T  30836116 tttttttttttgaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggagaaaaaaaaaaaaaaaaagaagg 30836215  T
Q  254 ggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 308  Q
    |||||||| ||||| || ||| ||||||||||||||||||||| |||||||||||||    
T  30836216 ggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccaccc 30836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 7845184 - 7845135
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaag 214  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  7845184 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 44362918 - 44362994
Alignment:
Q  166 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 242  Q
    |||| |||||||||||| |||  |||||||||||| || || |||||||| ||||||| ||| ||||||||||||||    
T  44362918 ttttttttttgaaacggaaaattattattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaaa 44362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 38542725 - 38542786
Alignment:
Q  79 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtg 140  Q
    |||||||||||||| ||||| || | ||||||||| || |||||||||||||||| ||||||    
T  38542725 taagagaaaacaactttgaaagaaagtgagaggaaatgatgttggtgatgtgagaatgagtg 38542786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 584123 - 584187
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 229  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  584123 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 7845138 - 7845080
Alignment:
Q  249 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    |||||||||||||||||| |||  |||||||||||||||  || |||||||||||||||||    
T  7845138 caaggggaaatcggttgcaacattaacaccggctcgaac--aatccccttaaaaaccaccc 7845080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 181 - 302
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  181 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccac-aaaacacc 277  Q
    ||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||  |||||||||| |||||||||||||||||||| | ||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  278 ggctcgaacaaaaaccccttaaaaa 302  Q
    || |||||||||| ||| |||||||    
T  16572098 ggttcgaacaaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 47571560 - 47571694
Alignment:
Q  166 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcggtt 264  Q
    |||| |||||||| |||||||| |||||||||||| || |||||| |||  ||||||| |||||||| ||  |||||||||| ||||||| |||| ||||    
T  47571560 ttttttttttgaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaaaataaatacaagggaaaattggtt 47571659  T
Q  265 gccacaaaacaccggctcgaacaaaaaccccttaaa 300  Q
    ||||| |||||||||||| |||||||||||||||||    
T  47571660 gccac-aaacaccggctcaaacaaaaaccccttaaa 47571694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 32183425 - 32183275
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaag-aagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacaca--aggggaaatc 260  Q
    ||||| ||||| || |||||||| ||||||||||||  |||||||||||||  ||||||| |||||||| ||||| |||| ||||| |  ||||||||||    
T  32183425 tttttttttttaaatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatc 32183326  T
Q  261 ggttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 308  Q
    |||||||| | |||||||||||||||||||||||||||  |||||||||||    
T  32183325 ggttgccatacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 32183275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 15186975 - 15187072
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggttgcc 267  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||| |||||  || ||||||||||||||||||||    
T  15186975 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggataaaaaagaatacaaggggaaatcggttgcc 15187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 5341793 - 5341724
Alignment:
Q  79 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtgtaagggtt 148  Q
    ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| | ||||||    
T  5341793 taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgtgagagtgagtctgagggtt 5341724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 305
Target Start/End: Original strand, 55133102 - 55133233
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 270  Q
    ||||||||||| ||||| ||||||||||   |||||||||||||| ||||||| || |||||||| ||| || | | |||| ||||||| | ||||||||    
T  55133102 tttttgaaacgacaaaatattattaacc---aagcccgtgcaagaagcactaataaactcggatgaaaagaaaacaaacaa-gggaaattgattgccaca 55133197  T
Q  271 -aaacaccggctcgaacaaaaaccccttaaaaacca 305  Q
     ||||| | |||||||||||||||| ||||||||||    
T  55133198 caaacatcagctcgaacaaaaaccctttaaaaacca 55133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 25641263 - 25641407
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 266  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||| ||||||| ||||| || |||    |||||||| | | |||||||||| ||||||    
T  25641263 tttttgaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgc 25641362  T
Q  267 caca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 308  Q
    || |  |||| |||||||||||||||||| ||  |||||||||||    
T  25641363 catactaacatcggctcgaacaaaaacccttttaaaaaaccaccc 25641407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 309
Target Start/End: Original strand, 16662301 - 16662441
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcc--a 268  Q
    |||||||| | |||||| |||||||||||| |||||||||| ||| ||||||| |||||  | ||||||||| |   | ||||| ||||| ||||||  |    
T  16662301 tttttgaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaaa-actaagaagggaaaatctgttgccata 16662399  T
Q  269 caaaacaccggctcgaacaaaaacccc-ttaaaaaccaccct 309  Q
    |||||||| |||||| ||||||||||| ||||||||||||||    
T  16662400 caaaacactggctcgtacaaaaacccctttaaaaaccaccct 16662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 307
Target Start/End: Original strand, 42390766 - 42390906
Alignment:
Q  171 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcggttgcc 267  Q
    |||||||| |||| |||  |||||  |||| |||||||||||||| | ||||| |||||||| ||||   ||||| ||| | ||||   |||||||||||    
T  42390766 tttttgaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtggagaaaaaaacaaataaaaggaacaatcggttgcc 42390865  T
Q  268 ac-aaaacaccggctcgaacaaaaaccccttaaaaaccacc 307  Q
     | ||||||||||||| ||||||||||||||||||||||||    
T  42390866 gctaaaacaccggctcaaacaaaaaccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 45511390 - 45511440
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaaga 215  Q
    ||||| |||||||| | |||||| |||||||||||| ||||||||||||||    
T  45511390 tttttttttttgaatcagcaaaatattattaaccaacaagcccgtgcaaga 45511440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 25222278 - 25222218
Alignment:
Q  106 gagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatata-ttataggagct 165  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||| || || |||||||||||    
T  25222278 gagagaaagtgatgttggtgatgtgagagtgagtataaaggtttatttatttataggagct 25222218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 308
Target Start/End: Original strand, 23172985 - 23173107
Alignment:
Q  189 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaa 285  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||| |||||| ||||||  | |||||||||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggctcgaa 23173084  T
Q  286 caaaaaccccttaaaaaccaccc 308  Q
    ||||| |||||||||||||||||    
T  23173085 caaaacccccttaaaaaccaccc 23173107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 183 - 308
Target Start/End: Complemental strand, 22887337 - 22887211
Alignment:
Q  183 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacacaaggggaaatcggttgccacaaaacaccggct 281  Q
    ||||| |||||||||||| |||||||||| ||||||||||| |||||||| ||| | |||| ||| | ||||| ||||| |||||||||||| || || |    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgggagaaaaaaaatataagggaaaatcagttgccacaaaagacaggtt 22887238  T
Q  282 cgaacaaaaaccccttaaaaaccaccc 308  Q
    | |||||||||||||||||||||||||    
T  22887237 caaacaaaaaccccttaaaaaccaccc 22887211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 9931785 - 9931935
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-------aaaaaataaacacaaggggaa 257  Q
    ||||| |||||||||||| ||| | ||||||||||| |||||||||||||| ||||||||||||| || |||       |||||||| | || |||||||    
T  9931785 tttttttttttgaaacggtaaata-ttattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgggaagaaaaaaaaatacaaacgaggggaa 9931883  T
Q  258 atcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    |||||||||| || ||||||| |||||||||||||| ||| |||||||||||    
T  9931884 atcggttgccgcacaaacaccagctcgaacaaaaacacctcaaaaaccaccc 9931935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 183 - 317
Target Start/End: Complemental strand, 25539947 - 25539810
Alignment:
Q  183 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcggttgccacaaaacaccg 278  Q
    ||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| || |||||| |    || ||||| |||||||||||||||  ||||| ||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtgaaaaaaaaacaaaaatacaagaggaaatcggttgccatcaaacatcg 25539849  T
Q  279 gctcgaacaaaaaccccttaaaaaccaccctaacactaa 317  Q
    |||||||||||||||||||||||||||||| || |||||    
T  25539848 gctcgaacaaaaaccccttaaaaaccaccccaaaactaa 25539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 10431204 - 10431063
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac--acaaggggaaatcg 261  Q
    ||||| |||||||||||| |||| |||||||| ||| || ||||||||||| ||| ||| ||| |||| |||| ||||| ||||  |||||| |||||||    
T  10431204 tttttttttttgaaacggaaaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcg 10431105  T
Q  262 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    ||||||||| |||||||| |||||||||||||| | ||||||    
T  10431104 gttgccacacaaacaccgactcgaacaaaaacctcataaaaa 10431063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 819134 - 819254
Alignment:
Q  182 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggttgccacaaaacaccggc 280  Q
    |||||| ||||||| |||| ||| ||||| |||| ||||||| ||| |||| ||||||||| | || |||| |||||||||||||||||||| ||||  |    
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaataaaacaaagggaaatcggttgccacaaa-caccaac 819232  T
Q  281 tcgaacaaaaaccccttaaaaa 302  Q
    ||||||||||||||||||||||    
T  819233 tcgaacaaaaaccccttaaaaa 819254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 308
Target Start/End: Original strand, 3677779 - 3677924
Alignment:
Q  166 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcg 261  Q
    |||| |||||||| | |||| | ||||||| |||| |||||| ||| ||||||||||| |||||||| ||||||||| |    || |||||||  |||||    
T  3677779 ttttttttttgaatcagcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtggaaaaaaaacaagaatacaagggacaatcg 3677877  T
Q  262 gttgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 308  Q
    |||||| ||| |||| ||||| |||||||||||||||||||||||||    
T  3677878 gttgccgcaatacactggctcaaacaaaaaccccttaaaaaccaccc 3677924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 165 - 293
Target Start/End: Original strand, 42241577 - 42241708
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat--ggaaaaaataaacacaaggggaaatcgg 262  Q
    ||||| ||||| || |||||||| |||||||||||| ||| ||| |||||||||||||| ||||||||||  | |||||||| | | |||||||||||||    
T  42241577 ttttttttttttaatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatgagaaaaaaatacaaagaaggggaaatcgg 42241676  T
Q  263 ttgccaca-aaacaccggctcgaacaaaaacc 293  Q
    | |||| | |||| |||||| |||||||||||    
T  42241677 tcgccatacaaactccggcttgaacaaaaacc 42241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 2292222 - 2292168
Alignment:
Q  250 aaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2292222 aaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 2292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 9597742 - 9597800
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 223  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |||||||    
T  9597742 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaa 9597800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 33112703 - 33112844
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagc-tcggatggaaaaaataaaca--caaggggaaatcg 261  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||| | ||  |||||||| |||||  |||||||||||||    
T  33112703 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcg 33112802  T
Q  262 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 302  Q
    ||||||| | ||||   |||||||||||||||||||||||||    
T  33112803 gttgccatacaaactttggctcgaacaaaaaccccttaaaaa 33112844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 10247049 - 10246910
Alignment:
Q  171 tttttgaaacggcaaaaa-attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccac 269  Q
    ||||| || ||||||||| |||||||||||| |||||||||||||| ||||||| | | || | |||| |||| | | | ||||| |||||||||| |||    
T  10247049 ttttttaatcggcaaaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaacaaagaagggaaaatcggttgtcac 10246950  T
Q  270 aaaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 308  Q
    | |||||||||||||||||||||||| |||||||||||||    
T  10246949 acaacaccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 164 - 396
Target Start/End: Complemental strand, 11546912 - 11546685
Alignment:
Q  164 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcgg 262  Q
    |||||| ||||| ||||||||||| |||||||||  | |||||||||||||  ||||||| |||||||| || ||||||| | | | |||| ||||||||    
T  11546912 cttttttttttttaaacggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggtgagaaaaaaaacaaagaaggagaaatcgg 11546813  T
Q  263 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatataca 361  Q
    ||| || | |||||||||||||||||||||| |||||||||     ||| | |||| | |  |||||||    |||| | ||||||||||||||||||||    
T  11546812 ttgtcatacaaacaccggctcgaacaaaaactccttaaaaa----actacccctaaagaaggaactacc---tacaagagtaatgacgcagacatataca 11546720  T
Q  362 aatgacaatccgcaagcatacccctgcatcaacac 396  Q
     |||||||||| || | |||||||||| |||||||    
T  11546719 tatgacaatcctcatgaatacccctgcgtcaacac 11546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 309
Target Start/End: Complemental strand, 6575860 - 6575720
Alignment:
Q  174 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccac 269  Q
    ||||| |||||||| |||||||| ||| |||||||||||||| ||||||| ||| |||| |||    |||||||| |||||| || ||||| |||| ||     
T  6575860 ttgaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaagaaaaaaatacacacaaaggaaaatcagttgtcat 6575761  T
Q  270 a-aaacaccggctcgaacaaaaaccccttaaaaaccaccct 309  Q
    | ||||| ||||||||||||||||| |||||||||||||||    
T  6575760 acaaacatcggctcgaacaaaaacctcttaaaaaccaccct 6575720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 166 - 308
Target Start/End: Complemental strand, 15859244 - 15859093
Alignment:
Q  166 ttttatttttgaaacggcaaaaaattattaaccaaga--agcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaa----ggggaaat 259  Q
    |||| |||| ||| |||||||| |||||||| ||| |  ||||||||||||  ||||||| |||||||| |||| |||| ||| ||||    ||||||||    
T  15859244 tttttttttagaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaat 15859145  T
Q  260 cggttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 308  Q
    ||||||||| | |||||||||||||||||||||||||||  |||||||||||    
T  15859144 cggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 15859093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 396
Target Start/End: Complemental strand, 34761306 - 34761080
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcgg 262  Q
    ||||| |||||||||||||||| | ||||||| | | |||||||||||||  ||||||| |||||||| |||  |||||||| | | |||  ||||||||    
T  34761306 tttttttttttgaaacggcaaata-ttattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcgg 34761208  T
Q  263 ttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatac 360  Q
    ||| || | |||||||| ||||||||||||| |||| |||||||||||     |||| | |  |||||||    |||| | ||||||||||| |||||||    
T  34761207 ttgtcatacaaacaccgactcgaacaaaaactccttaaaaaaccaccc-----ctaaagaaggaactacc---tacaacagtaatgacgcaggcatatac 34761116  T
Q  361 aaatgacaatccgcaagcatacccctgcatcaacac 396  Q
    | |||||||||| || | |||||||||| |||||||    
T  34761115 atatgacaatcctcatgaatacccctgcgtcaacac 34761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 33984814 - 33984753
Alignment:
Q  249 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccc 308  Q
    |||||||||||||||||||| | |||||| || ||||||||||||||||| |||||||||||    
T  33984814 caaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccaccc 33984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 12754422 - 12754465
Alignment:
Q  180 cggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 223  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  12754422 cggcaaaaaattattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 12883 - 12947
Alignment:
Q  165 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 229  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  12883 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 8012 - 7956
Alignment:
Q  167 tttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 223  Q
    ||||||||| || |||||||| |||||||||||| |||||  ||||| |||||||||    
T  8012 tttatttttaaatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaa 7956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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