View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_10 (Length: 407)
Name: NF12899_low_10
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 53491617 - 53491223
Alignment:
| Q |
1 |
ttggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53491617 |
ttggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaaga |
53491518 |
T |
|
| Q |
101 |
tgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491517 |
tgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttc |
53491418 |
T |
|
| Q |
201 |
tcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtc |
300 |
Q |
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| T |
53491417 |
tcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtc |
53491318 |
T |
|
| Q |
301 |
ttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgctcaatgagataccaaataaatcacttcaatttttcacaggtt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491317 |
ttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 53499210 - 53498819
Alignment:
| Q |
1 |
ttggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaaga |
100 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53499210 |
ttggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaaga |
53499111 |
T |
|
| Q |
101 |
tgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || || |
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| T |
53499110 |
tgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaatacgtgctgagttagattctagagatagctactc |
53499012 |
T |
|
| Q |
201 |
tcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtc |
300 |
Q |
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|||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||| |
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| T |
53499011 |
tcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtc |
53498912 |
T |
|
| Q |
301 |
ttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgctcaatgagataccaaataaatcacttcaatttttcacaggtt |
395 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
53498911 |
ctgttgttgctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 16070296 - 16069958
Alignment:
| Q |
1 |
ttggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaaga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
16070296 |
ttggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaaaa |
16070197 |
T |
|
| Q |
101 |
tgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttc |
200 |
Q |
| |
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|||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| |||||||||||||||||||||| ||| |
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| T |
16070196 |
cgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagataactattc |
16070098 |
T |
|
| Q |
201 |
tcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtc |
300 |
Q |
| |
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|| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| ||||||| |
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| T |
16070097 |
tcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaatgttgtt |
16069998 |
T |
|
| Q |
301 |
ttgttgttgctcttatattcttacatatgtcattttgctt |
340 |
Q |
| |
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| || |||| ||| ||||||| ||||||||||| ||||| |
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| T |
16069997 |
atattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
216 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
254 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 45355162 - 45355440
Alignment:
| Q |
8 |
gatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |
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| T |
45355162 |
gatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcctgtgccttacaaagatgctgat |
45355261 |
T |
|
| Q |
108 |
actcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaa |
207 |
Q |
| |
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||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | ||||| |||| |||||||| | |
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| T |
45355262 |
actcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgccagagacaactattctcctgga |
45355360 |
T |
|
| Q |
208 |
aggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
287 |
Q |
| |
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|||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| |
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| T |
45355361 |
tggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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