View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12899_low_11 (Length: 403)
Name: NF12899_low_11
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_11 |
 | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0373 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 177 - 386
Target Start/End: Original strand, 6793405 - 6793614
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaat |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6793405 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctattgttgtgttgtctacaaat |
6793504 |
T |
|
| Q |
277 |
tacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6793505 |
tacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctc |
6793604 |
T |
|
| Q |
377 |
cctcagaagt |
386 |
Q |
| |
|
|||||||||| |
|
|
| T |
6793605 |
cctcagaagt |
6793614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 180 - 386
Target Start/End: Complemental strand, 6592272 - 6592066
Alignment:
| Q |
180 |
agacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattac |
279 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
6592272 |
agacgatgacgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattgaacagtctagaacttgtatcgttgttttgtctacaaattat |
6592173 |
T |
|
| Q |
280 |
gccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccct |
379 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||| | |
|
|
| T |
6592172 |
gctaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggtcgttgtgccagtattttatgaggtagctccat |
6592073 |
T |
|
| Q |
380 |
cagaagt |
386 |
Q |
| |
|
||||||| |
|
|
| T |
6592072 |
cagaagt |
6592066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 177 - 386
Target Start/End: Original strand, 6833356 - 6833565
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaat |
276 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
6833356 |
caaagacgataacgagattcaacgaggagatcagatctcaatctcactgttgcgagcaattgggcagtctagaatttctatcattgttttgtctacaaat |
6833455 |
T |
|
| Q |
277 |
tacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctc |
376 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6833456 |
tatgccaattcaagatggtgtatgctagagttggagaagataatggaaattggaagaaccaagggtcttattgttgtgccagtgttctatgaggtagctc |
6833555 |
T |
|
| Q |
377 |
cctcagaagt |
386 |
Q |
| |
|
|||||||||| |
|
|
| T |
6833556 |
cctcagaagt |
6833565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 180 - 386
Target Start/End: Original strand, 6770483 - 6770689
Alignment:
| Q |
180 |
agacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattac |
279 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
6770483 |
agacgatgatgagcttcaacgaggagagcatatatcaatcgcactgttgcgagcaattggacagtctagaatttctatagttgttttctctacaaattat |
6770582 |
T |
|
| Q |
280 |
gccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccct |
379 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||| | ||| | |
|
|
| T |
6770583 |
gctaattctagatggtgtatgctagagttggagaagatcatggaaattggcagaaccaggggtttggttgttgtgccagtgttctatgaggtggatcctt |
6770682 |
T |
|
| Q |
380 |
cagaagt |
386 |
Q |
| |
|
||||||| |
|
|
| T |
6770683 |
cagaagt |
6770689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 191 - 386
Target Start/End: Complemental strand, 6549424 - 6549229
Alignment:
| Q |
191 |
agattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgccaattcaag |
290 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||| || ||||| || |
|
|
| T |
6549424 |
agattcaacgaggagatcagatatcaatctcactgtttcgagcaattggacagtctagaatttgtatcgttgttttgtctaaaaattatgctaattctag |
6549325 |
T |
|
| Q |
291 |
atggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcagaagt |
386 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| | |||||||||||| |
|
|
| T |
6549324 |
atggtgtatgcttgagttggagaacatcatggaaattggtagaaacaggggtctggtcgttgtaccagtgttctatgaggtggatccctcagaagt |
6549229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 177 - 386
Target Start/End: Complemental strand, 6537113 - 6536904
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaat |
276 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| | ||||||| ||||||| ||| |
|
|
| T |
6537113 |
caaagacgatgacgagatcgaacgaggagatcagatctcaatatcactgttgcgagcaattggacggtctagaattgccctcgttgttttgtctaaaaaa |
6537014 |
T |
|
| Q |
277 |
tacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctc |
376 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||| | || |
|
|
| T |
6537013 |
tatgctaattcaagatggtgtatgctagagttggagaagatcatggaaattggcagggccaggggtctggtggttgtgccagtgttctatgaggtggatc |
6536914 |
T |
|
| Q |
377 |
cctcagaagt |
386 |
Q |
| |
|
|||||||||| |
|
|
| T |
6536913 |
cctcagaagt |
6536904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 177 - 386
Target Start/End: Complemental strand, 6625906 - 6625697
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaat |
276 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |||||||||| ||| || || || |||||||| |
|
|
| T |
6625906 |
caaagacgacgatgaaattcaacgaggcgatcagatctcaatttcactattgcgagcaatcggacactctagaatttttattgtggttttatctacaaac |
6625807 |
T |
|
| Q |
277 |
tacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctc |
376 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||||||| ||||||| || |
|
|
| T |
6625806 |
tatgctaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaccgggggtctggtggttgtaccagtgttctatgaggtagatc |
6625707 |
T |
|
| Q |
377 |
cctcagaagt |
386 |
Q |
| |
|
|||||||||| |
|
|
| T |
6625706 |
cctcagaagt |
6625697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 179 - 387
Target Start/End: Original strand, 6749911 - 6750119
Alignment:
| Q |
179 |
aagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaatta |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || || || || ||||| |||||||||| |||||||||||||||||||||||| |||||||||| || |
|
|
| T |
6749911 |
aagacgatgacgagattcaacgaggagatcaaatatcgatatcgctgttccgagcaattgaacagtctagaatttctatcgttgttttgtctacaagcta |
6750010 |
T |
|
| Q |
279 |
cgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccc |
378 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||| |||||||||||||||||||| || || | ||| |
|
|
| T |
6750011 |
tgctaattcaagatggtgtatgctagagttggagaagatcatggaaatttgtagaaacaagggtctagttgttgtgccagtgttctatgatgtggacccc |
6750110 |
T |
|
| Q |
379 |
tcagaagtg |
387 |
Q |
| |
|
||||||||| |
|
|
| T |
6750111 |
tcagaagtg |
6750119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 184 - 386
Target Start/End: Original strand, 6648116 - 6648318
Alignment:
| Q |
184 |
gatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgcca |
283 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||| ||| || | |||||||||||||| || | |
|
|
| T |
6648116 |
gatgatcagattcagcgaggagatcaaatctcagtctcactgttgcgagcaatcggacaatctagaatttccatcattattttgtctacaaattatgcta |
6648215 |
T |
|
| Q |
284 |
attcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcaga |
383 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||| |||||||||| || ||||||| ||||||||| |
|
|
| T |
6648216 |
attccagatggtgtatgctagagttggtgaagataatggaaattggtagaactaggggtctggtggttttgccagtgttttatgaggtagatccctcaga |
6648315 |
T |
|
| Q |
384 |
agt |
386 |
Q |
| |
|
||| |
|
|
| T |
6648316 |
agt |
6648318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 177 - 386
Target Start/End: Original strand, 6716466 - 6716675
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaat |
276 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||||| |||||||| | |||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6716466 |
caaagacgacgatgggattcaacgaggagatcaaatctcggtctcactggggaaagcaattgaacagtctagaatttctatcgttgttttgtctacaaat |
6716565 |
T |
|
| Q |
277 |
tacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctc |
376 |
Q |
| |
|
|| || |||||||||||||||||| |||||||||||||||| |||||| ||||||||| | |||| ||| ||||||||||| ||||| || |||| || |
|
|
| T |
6716566 |
tatgctaattcaagatggtgtatgttagagttggagaagatcatggaagttggcagaatgaacggtcgggtggttgtgccagtcttctatgatgtagatc |
6716665 |
T |
|
| Q |
377 |
cctcagaagt |
386 |
Q |
| |
|
|||||||||| |
|
|
| T |
6716666 |
cctcagaagt |
6716675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 184 - 386
Target Start/End: Complemental strand, 6501393 - 6501191
Alignment:
| Q |
184 |
gatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgcca |
283 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||| ||||| ||| |||||| || | ||||||||||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
6501393 |
gatgacgagattcagagaggagatcgaatctcaatgtcactattgaaagcaatcgggcggtctagaatttctattgttgttttgtctacaacttatgcca |
6501294 |
T |
|
| Q |
284 |
attcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcaga |
383 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||| | || |||| | ||||||||||||||||||||||||| |||||| || |
|
|
| T |
6501293 |
attcgagatggtgtatgctagagttggtgaagataatggaaattggcagaactatggatctgatcgttgtgccagtgttctacgaggtagatccctctga |
6501194 |
T |
|
| Q |
384 |
agt |
386 |
Q |
| |
|
||| |
|
|
| T |
6501193 |
agt |
6501191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 184 - 386
Target Start/End: Original strand, 6812788 - 6812988
Alignment:
| Q |
184 |
gatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgcca |
283 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||| || || | |||||| || | |
|
|
| T |
6812788 |
gatgctgagattcaacgaggagatcatatctcaatctc--tgttgaaagcaattggatggtctagaatttctatagttgttttatcgataaattatgcta |
6812885 |
T |
|
| Q |
284 |
attcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcaga |
383 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||||||||| |||| | | ||| |||| ||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
6812886 |
attcaagatggtgtatgtttgagttggagaagatcatggaaattggaagaaccggtggtatggtggttgtaccagtcttctatgaggtagatccctcaga |
6812985 |
T |
|
| Q |
384 |
agt |
386 |
Q |
| |
|
||| |
|
|
| T |
6812986 |
agt |
6812988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 190 - 386
Target Start/End: Original strand, 6712715 - 6712911
Alignment:
| Q |
190 |
gagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgccaattcaa |
289 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||||| |||| || ||||||||||| ||||| ||||| | |||||| || ||||||| |
|
|
| T |
6712715 |
gagattcaacaaggagatgatatctcaatctcactgttacgagcaattcgacactcaagaatttctatagttgttttgtcgataaattatgctaattcaa |
6712814 |
T |
|
| Q |
290 |
gatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcagaagt |
386 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||| |||| | | |||||||| ||||| ||||| | || ||||||| ||| |||||||| |
|
|
| T |
6712815 |
gatggtgtatgtttgagttggagaagatcatggaaattggaagaaccggtggtctggtggttgtaccagtcctttatgaggtagatccatcagaagt |
6712911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 10034800 - 10034935
Alignment:
| Q |
178 |
aaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaatt |
277 |
Q |
| |
|
||||||||||| | ||||||||| |||||| | |||||| ||||| |||| | ||||||||| ||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
10034800 |
aaagacgatgacgggattcaacgtggagataagatctcagtctcattgttacaagcaattggtcagtctagaatttctattgttgtattgtctagaaatt |
10034899 |
T |
|
| Q |
278 |
acgccaattcaagatggtgtatgctagagttggaga |
313 |
Q |
| |
|
|| ||||||| |||||||||||| |||||||||| |
|
|
| T |
10034900 |
ttgctaattcaaaatggtgtatgcttgagttggaga |
10034935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 177 - 386
Target Start/End: Complemental strand, 7889732 - 7889523
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaat |
276 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| || |||| | | ||| | |||||||||| ||||||||| ||||| |||||| ||| |
|
|
| T |
7889732 |
caaagacgatgatgggattcaacgaggagatcagatctcagtcgcactaatccaagctgtcggacagtctaaaatttctattgttgttctgtctaaaaac |
7889633 |
T |
|
| Q |
277 |
tacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctc |
376 |
Q |
| |
|
| || ||||||| |||||||||| ||||||||||| || ||||||| | |||| || |||| |||| |||||||||||||||| ||||||| || |
|
|
| T |
7889632 |
tttgctaattcaaaatggtgtatgacagagttggagagaattgtggaaatcagtagaaccaagggtatggtgcttgtgccagtgttctatgaggtagatc |
7889533 |
T |
|
| Q |
377 |
cctcagaagt |
386 |
Q |
| |
|
|||| ||||| |
|
|
| T |
7889532 |
cctcggaagt |
7889523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 21227194 - 21227274
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctat |
257 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||| |||||| |||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
21227194 |
caaagacgacgatgggatagaacgaggagatcagatctcaggctcactcttgcaagcaatcggacagtctagaatttctat |
21227274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 6667200 - 6667237
Alignment:
| Q |
184 |
gatgatgagattcaacgaggagatcatatctcaatctc |
221 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
6667200 |
gatgatgagattcaacgaggtgatcagatctcaatctc |
6667237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 14716033 - 14715889
Alignment:
| Q |
35 |
ctctttctattcaatcaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
134 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14716033 |
ctctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
14715934 |
T |
|
| Q |
135 |
ttgtaaccaactacttatagctaattacaacaattatttctacaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14715933 |
ttgtaaccaactacttatagctaattacaacaattatttctacaa |
14715889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 8984756 - 8984613
Alignment:
| Q |
35 |
ctctttctattcaatcaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
134 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8984756 |
ctctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
8984657 |
T |
|
| Q |
135 |
ttgtaaccaactacttatagctaattacaacaattatttctaca |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8984656 |
ttgtaaccaactacttatagctaattacaacaattatttctaca |
8984613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 8990785 - 8990642
Alignment:
| Q |
35 |
ctctttctattcaatcaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
134 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8990785 |
ctctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
8990686 |
T |
|
| Q |
135 |
ttgtaaccaactacttatagctaattacaacaattatttctaca |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8990685 |
ttgtaaccaactacttatagctaattacaacaattatttctaca |
8990642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 9015232 - 9015089
Alignment:
| Q |
35 |
ctctttctattcaatcaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
134 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9015232 |
ctctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
9015133 |
T |
|
| Q |
135 |
ttgtaaccaactacttatagctaattacaacaattatttctaca |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9015132 |
ttgtaaccaactacttatagctaattacaacaattatttctaca |
9015089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 14720589 - 14720446
Alignment:
| Q |
35 |
ctctttctattcaatcaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
134 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14720589 |
ctctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaactaattcactaatccta |
14720490 |
T |
|
| Q |
135 |
ttgtaaccaactacttatagctaattacaacaattatttctaca |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14720489 |
ttgtaaccaactacttatagctaattacaacaattatttctaca |
14720446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 5366464 - 5366528
Alignment:
| Q |
194 |
ttcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatc |
258 |
Q |
| |
|
||||| |||||||||| || |||| ||||| ||||||||||||| |||| || ||||||||||| |
|
|
| T |
5366464 |
ttcaaagaggagatcacatttcaacatcactcttgcgagcaattgaacagactcgaatttctatc |
5366528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 197 - 386
Target Start/End: Complemental strand, 2190 - 2001
Alignment:
| Q |
197 |
aacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgccaattcaagatggtg |
296 |
Q |
| |
|
||||||||||||| ||||| |||||||| | |||||||| |||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
2190 |
aacgaggagatcaaatctcggtctcactggggaaagcaattgaacagtctagaatttctatcgttgttttgtctacaaattatgctaattcaagatggtg |
2091 |
T |
|
| Q |
297 |
tatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcagaagt |
386 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||||||||| | |||| ||| ||||||||||| ||||| || |||| |||||||||||| |
|
|
| T |
2090 |
tatgttagagttggagaagatcatggaagttggcagaatgaacggtcgggtggttgtgccagtcttctatgatgtagatccctcagaagt |
2001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 184 - 386
Target Start/End: Original strand, 260 - 460
Alignment:
| Q |
184 |
gatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgcca |
283 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||| || || | |||||| || | |
|
|
| T |
260 |
gatgctgagattcaacgaggagatcatatctcaatctc--tgttgaaagcaattggatggtctagaatttctatagttgttttatcgataaattatgcta |
357 |
T |
|
| Q |
284 |
attcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcaga |
383 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||||||||| |||| | | ||| |||| ||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
358 |
attcaagatggtgtatgtttgagttggagaagatcatggaaattggaagaaccggtggtatggtggttgtaccagtcttctatgaggtagatccctcaga |
457 |
T |
|
| Q |
384 |
agt |
386 |
Q |
| |
|
||| |
|
|
| T |
458 |
agt |
460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 180 - 386
Target Start/End: Complemental strand, 34719923 - 34719717
Alignment:
| Q |
180 |
agacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattac |
279 |
Q |
| |
|
||||||| |||||||||| ||||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
34719923 |
agacgataatgagattcagcgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattat |
34719824 |
T |
|
| Q |
280 |
gccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccct |
379 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| | || |||||| ||| |||| ||||| |||||| ||| | ||||||||||| |||||| ||||| |
|
|
| T |
34719823 |
gcaaattcaagatggtgtatgcaagagttggagcaaatcatggaatgtggaagaagcagggatctggtggttataccagtgttctatgaggtaaatccct |
34719724 |
T |
|
| Q |
380 |
cagaagt |
386 |
Q |
| |
|
||||||| |
|
|
| T |
34719723 |
cagaagt |
34719717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 177 - 386
Target Start/End: Original strand, 18925513 - 18925722
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaat |
276 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| ||||||| ||| |||||||| | ||| |||||||||||| ||||| ||||||| ||| |
|
|
| T |
18925513 |
caaagacaatgatgagattcaacgaggagatcagatctcattctcacttttgaaagcaattgaagagtgtagaatttctatagttgttttgtctagtaat |
18925612 |
T |
|
| Q |
277 |
tacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctc |
376 |
Q |
| |
|
|| || |||||||||||||||||| ||||||||| || || ||| || || |||||| ||||| | | ||| | ||||||||||| ||||||| || |
|
|
| T |
18925613 |
tatgctaattcaagatggtgtatgtcagagttggacaacatcatgaaagttagcagaagggagggtcggatggttataccagtgttctatgaggtagatc |
18925712 |
T |
|
| Q |
377 |
cctcagaagt |
386 |
Q |
| |
|
|||||||||| |
|
|
| T |
18925713 |
cctcagaagt |
18925722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 183 - 365
Target Start/End: Complemental strand, 34734385 - 34734203
Alignment:
| Q |
183 |
cgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgcc |
282 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| | ||| |||||| ||| || ||||||||||||||||||||| |||| ||||||| ||| || || |
|
|
| T |
34734385 |
cgatgatgagattcaacgaggtgatcaggtctcagtgtcattgttgcaagccataggacagtctagaatttctatcattgttttgtctagaaactatgct |
34734286 |
T |
|
| Q |
283 |
aattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttcta |
365 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||| | | |||||| | |||| |||| ||||| ||||||||||| |
|
|
| T |
34734285 |
aattcaagatggtgtatgctagagctggagaatatcatgggcaatagcagaacccagggtatggtggttgtaccagtgttcta |
34734203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 184 - 383
Target Start/End: Complemental strand, 34729820 - 34729621
Alignment:
| Q |
184 |
gatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattacgcca |
283 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||| |||||| |||||||| ||||||| ||||||||||||||| ||||||| || || || |
|
|
| T |
34729820 |
gatgatgagattcaacgaggtgatcagatctcagcgtcattgttgcaagcaattgagcagtctaaaatttctatcgttgttttgtctagaagctatgctg |
34729721 |
T |
|
| Q |
284 |
attcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcaga |
383 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||| | | |||||| | |||| |||| ||||| ||||||||||| || ||| ||||||||| |
|
|
| T |
34729720 |
attcaagatggtgtatgctagagctggagaacatcatgggcaatagcagaacccagggtatggtggttgtaccagtgttctatgaaatagatccctcaga |
34729621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 386
Target Start/End: Complemental strand, 34715160 - 34714954
Alignment:
| Q |
180 |
agacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctatcgttgtgttgtctacaaattac |
279 |
Q |
| |
|
||||||| |||||||||||| |||||| | |||||| ||| || ||| ||||||| |||||| |||||||| ||| ||||| |||| || ||||| |
|
|
| T |
34715160 |
agacgataatgagattcaaccaggagaaaagatctcagtctaccttttggaagcaattagacagtatagaatttgtattgttgttttgtatagtaattat |
34715061 |
T |
|
| Q |
280 |
gccaattcaagatggtgtatgctagagttggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccct |
379 |
Q |
| |
|
|| | ||||| ||| |||||| |||||||||| | || ||| || | ||||| | ||||| |||| ||| | |||||||| || ||||||| ||||| |
|
|
| T |
34715060 |
gctagttcaaactggcgtatgcaagagttggaggaaatcatgaaatgtcgcagacgctggggtttggtggttataccagtgttttatgaggtagatccct |
34714961 |
T |
|
| Q |
380 |
cagaagt |
386 |
Q |
| |
|
||||||| |
|
|
| T |
34714960 |
cagaagt |
34714954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 12768 - 12690
Alignment:
| Q |
308 |
tggagaagataatggaaattggcagaaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcagaagt |
386 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12768 |
tggagaagataatggaaattggcagaaccaggggtctggttgttgtgccagtgttttacgaggtagctccctcagaagt |
12690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 12853 - 12773
Alignment:
| Q |
177 |
caaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgagcaattggacagtctagaatttctat |
257 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
12853 |
caaagacgatgatgagattcaccgaggagatcatatctcaatctcactgtgccgaccaattggccagtctagaatttctat |
12773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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