View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_12 (Length: 394)
Name: NF12899_low_12
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 12804919 - 12805292
Alignment:
| Q |
19 |
aatgaagccaattcaaattgaaatgagggggattgtgagattgtgcacgtatgagaatgtacggttaaaagaagacttaaagacgatgaccggagctacc |
118 |
Q |
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| T |
12804919 |
aatgaagccaattcaaattgaaatgagagggattgtgagattgtgcacgtatgagaatgtacggttaaaagaagacttaaagacaatgaccggagctacc |
12805018 |
T |
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| Q |
119 |
tttacaaacaatttgcatctttttcccgatatatcatatggtaagaacttcgcaagtgtgcattacattgatcaattttggaacgaattgaatgttgggt |
218 |
Q |
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| T |
12805019 |
tttacaaacaatttgcatctttttcccgatatatcatatcgtaagaacttcgcaagtgtgcattacattgatcaattttggaatgagttgaatgttgggt |
12805118 |
T |
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| Q |
219 |
aagttcnnnnnnntgtgtgagtgacgacaaaacatgctaaattgactcatgttgatttgtagagatagctgctaatacttaaagttgtataagattttac |
318 |
Q |
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| T |
12805119 |
aagttcaaaaaaatgtgtgagtgacgacaaaacatactaaattgacttatgttgatttgtagagataactgctaatacttaaagttgtataagattttac |
12805218 |
T |
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| Q |
319 |
taaagctatcaaaacaaaccatcttttagtacaatatggttcaccgacgaaccaaaccgatattcttggacatg |
392 |
Q |
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| T |
12805219 |
taaagctgtcaaaacaaaccatcttttagtacaatatggttcacggacgaaccaaaccgacatttttgggcatg |
12805292 |
T |
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