View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_13 (Length: 390)
Name: NF12899_low_13
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_13 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 166 - 380
Target Start/End: Original strand, 5385124 - 5385340
Alignment:
| Q |
166 |
atgatgttgaaaagttctaaaataggagtctgctctattaaatagtttagtattctgattagtattttctccttttgaccacaagcttctgcaacg--ta |
263 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
5385124 |
atgatgttgaaaagttctaaaataggagtctacactattaaatagtttagtattctgattattattttctccttttgaccacaagcttctgcaacgtata |
5385223 |
T |
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| Q |
264 |
gaggatatcagtactgctttgagtaaataaatgttaggagagaggaacctctgaatttgaaagaaacaatnnnnnnnnttctcatgtaagtaattctttt |
363 |
Q |
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| T |
5385224 |
gaggatatcagtactgctttgagtaaataaatgttaggagtgaggaacctctgaatttgaaagaaacaataaaaaaaattctcatgtaagtaattctttt |
5385323 |
T |
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| Q |
364 |
atatatttttacctatg |
380 |
Q |
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||||||||||||||||| |
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| T |
5385324 |
atatatttttacctatg |
5385340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 5384931 - 5385077
Alignment:
| Q |
20 |
ttactcacatcatagtgcatccatggtaacttgaatgcaaattttctttggtgcgtatgatttgaagttataccaaaaattgatatggtctcatcaaggc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5384931 |
ttactcacatcatagtgcatccatggtaacttgaatgcaaattttctttggtgcgtatgatttgaagttataccaaaaattgatatggtctcatcaaggc |
5385030 |
T |
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| Q |
120 |
ttcttctcaaagatttgttttgtatatttaatttcctaatataaaaa |
166 |
Q |
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| T |
5385031 |
ttctcctcaaagatttgttttgtatatttaatttcctaatataaaaa |
5385077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 166 - 380
Target Start/End: Complemental strand, 7302 - 7082
Alignment:
| Q |
166 |
atgatgttgaaaagttctaaaataggagtctgctctattaaata---gtttagtattctgattagtattttctccttttgaccacaagcttctgcaacgt |
262 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
7302 |
atgatgttggaaagttctaaaataggagtctgctctattaaatactagtttagtattctgattagtattttctccttt-gaccacaagcttctgcaatgt |
7204 |
T |
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| Q |
263 |
agaggatatcagtactgctttgagtaaataaatgttaggagagaggaacctctgaatttgaaagaaacaatnnnnnnnnttctcatg----taagtaatt |
358 |
Q |
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| T |
7203 |
agaggatagcagtactgctttgagtaaataaatgttaggagagaggaacctttgaatttgaaagaaacaataaaaaaaattctcatgttaattagtaatt |
7104 |
T |
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| Q |
359 |
cttttatatatttttacctatg |
380 |
Q |
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| T |
7103 |
cttttatatatttttacctatg |
7082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 7393 - 7336
Alignment:
| Q |
109 |
ctcatcaaggcttcttctcaaagatttgttttgtatatttaatttcctaatataaaaat |
167 |
Q |
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|||||||| |||| | |||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
7393 |
ctcatcaaagcttatactcaaagatttgttttctata-ttaatttcctaatataaaaat |
7336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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