View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_16 (Length: 376)
Name: NF12899_low_16
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 53491937 - 53491588
Alignment:
| Q |
19 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggtt |
118 |
Q |
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| T |
53491937 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggtt |
53491838 |
T |
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| Q |
119 |
gtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttg |
218 |
Q |
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| T |
53491837 |
gtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttg |
53491738 |
T |
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| Q |
219 |
gcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491737 |
gcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatattt |
53491638 |
T |
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| Q |
319 |
ttgtccgcttttttaacagattggagcgatggtgatggttcatgatgatg |
368 |
Q |
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| T |
53491637 |
ttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatg |
53491588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 81 - 362
Target Start/End: Complemental strand, 53499468 - 53499187
Alignment:
| Q |
81 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
180 |
Q |
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| T |
53499468 |
tgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggta |
53499369 |
T |
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| Q |
181 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
280 |
Q |
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| T |
53499368 |
aaatttgaagataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
53499269 |
T |
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| Q |
281 |
tggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatg |
362 |
Q |
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| T |
53499268 |
tggaagaactccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatg |
53499187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 16070576 - 16070390
Alignment:
| Q |
81 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
180 |
Q |
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||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||| || |
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| T |
16070576 |
tgttcaatttttctaggcttttattccaaacattggtcgtgggatacaaggtgcagctacccattgtttgggacaaaagtttgctgagaagtttgagata |
16070477 |
T |
|
| Q |
181 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtcta |
267 |
Q |
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| T |
16070476 |
aactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 53499936 - 53499888
Alignment:
| Q |
19 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttg |
67 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
53499936 |
aggaatctgccttactatatgcatttttggcatctgtaatgagtctttg |
53499888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 16070303 - 16070267
Alignment:
| Q |
332 |
taacagattggagcgatggtgatggttcatgatgatg |
368 |
Q |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatg |
16070267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 258
Target Start/End: Original strand, 45354908 - 45355076
Alignment:
| Q |
90 |
ttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaa |
189 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| |||||| ||| ||| ||| |||| | |||| |
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| T |
45354908 |
ttcctaggcatttattccaaacactggtcgtggtatacaaggtgcaacttctcattgtttgggacaaaattttgctaaaatgtttgagataaactatgaa |
45355007 |
T |
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| Q |
190 |
gatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttt |
258 |
Q |
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|| ||||||||||||||||||||| |||||||| || |||| |||| ||||||||||||||||||| |
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| T |
45355008 |
aatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt |
45355076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 45355140 - 45355184
Alignment:
| Q |
324 |
cgcttttttaacagattggagcgatggtgatggttcatgatgatg |
368 |
Q |
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| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatg |
45355184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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