View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_17 (Length: 375)
Name: NF12899_low_17
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 5400147 - 5400505
Alignment:
| Q |
20 |
gaggagtgtgctaaatgcttatgtattagtggtatatatat--------gccatatgttcttatagtgactctgaaaatatatgagaacnnnnnnnnt-t |
110 |
Q |
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| T |
5400147 |
gaggagtgtgctaaatgcttatgtattagtggtatatatatatatatatgtcatatgttcttatagtgactctgaaaatatgtgagaacaaaaaaaaaat |
5400246 |
T |
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| Q |
111 |
catcatggttttcagtttcatgaaacatgctgaatagaaacttgagtagagatattcatgattcagtgactgagtatgttagtgtgagaattttataacc |
210 |
Q |
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| T |
5400247 |
catcatggttttcagtttcatgaaacatgctgaatagaaacttgagtagagatattcatgattcattgactgagtatgttagtgtgagaattttataacc |
5400346 |
T |
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| Q |
211 |
gcatagaaattggaaaagtgaaaatgtaattgaagaaggaaagcgcgagtggtgaagatagattagtaggtttatatttcttccataaagatgaacataa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400347 |
gcatagaaattggaaaagtgaaaatgtaattgaagaaggaaagcgcgagtggtgaagatagattagtaggtttatatttcttccataaagatgaacataa |
5400446 |
T |
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| Q |
311 |
aatttaggttggctgaaaatgctgtaaatcatgatatttgcgtaaaatctctctgctcc |
369 |
Q |
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| T |
5400447 |
aatttaggttggctgaaaatgctgtaaatcatgatatttgcgtaaaatctctctgctcc |
5400505 |
T |
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