View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_18 (Length: 368)
Name: NF12899_low_18
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_18 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 30264764 - 30264423
Alignment:
| Q |
19 |
tttttatgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatataggtgagagataa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30264764 |
tttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatataggtgagagataa |
30264665 |
T |
|
| Q |
119 |
agatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcat |
218 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264664 |
agatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcaa |
30264565 |
T |
|
| Q |
219 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264564 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
30264465 |
T |
|
| Q |
319 |
cttacaccataatattcaaacttcatcatgcacttgatgatg |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30264464 |
cttacaccataatattcaaacttcatcatgcacttggtgatg |
30264423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 30287424 - 30287765
Alignment:
| Q |
19 |
tttttatgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatataggtgagagataa |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30287424 |
tttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatataggtgagagataa |
30287523 |
T |
|
| Q |
119 |
agatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcat |
218 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287524 |
agatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcaa |
30287623 |
T |
|
| Q |
219 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287624 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
30287723 |
T |
|
| Q |
319 |
cttacaccataatattcaaacttcatcatgcacttgatgatg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30287724 |
cttacaccataatattcaaacttcatcatgcacttggtgatg |
30287765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 101 - 317
Target Start/End: Complemental strand, 30271576 - 30271360
Alignment:
| Q |
101 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
200 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||| |
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| T |
30271576 |
tatataggtgagagacaaagatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatca |
30271477 |
T |
|
| Q |
201 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
300 |
Q |
| |
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|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || | |
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| T |
30271476 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaat |
30271377 |
T |
|
| Q |
301 |
atccaacaagcaatgct |
317 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
30271376 |
atccaacaagaaatgct |
30271360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 317
Target Start/End: Original strand, 30280613 - 30280829
Alignment:
| Q |
101 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
200 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
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|
| T |
30280613 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30280712 |
T |
|
| Q |
201 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
300 |
Q |
| |
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|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
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|
| T |
30280713 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30280812 |
T |
|
| Q |
301 |
atccaacaagcaatgct |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
30280813 |
atccaacaagcaatgct |
30280829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 317
Target Start/End: Complemental strand, 30304643 - 30304427
Alignment:
| Q |
101 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
200 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
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| T |
30304643 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30304544 |
T |
|
| Q |
201 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
300 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
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|
| T |
30304543 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30304444 |
T |
|
| Q |
301 |
atccaacaagcaatgct |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
30304443 |
atccaacaagcaatgct |
30304427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 30048723 - 30048621
Alignment:
| Q |
258 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatg |
357 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |
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|
| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30048624 |
T |
|
| Q |
358 |
atg |
360 |
Q |
| |
|
||| |
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|
| T |
30048623 |
atg |
30048621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 30063064 - 30062962
Alignment:
| Q |
258 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatg |
357 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |
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|
| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30062965 |
T |
|
| Q |
358 |
atg |
360 |
Q |
| |
|
||| |
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|
| T |
30062964 |
atg |
30062962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 252 - 354
Target Start/End: Complemental strand, 30032483 - 30032381
Alignment:
| Q |
252 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
351 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
352 |
ttg |
354 |
Q |
| |
|
||| |
|
|
| T |
30032383 |
ttg |
30032381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 30228850 - 30228760
Alignment:
| Q |
270 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg |
360 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatg |
30228760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 30220209 - 30220261
Alignment:
| Q |
265 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgct |
317 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| |
|
|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgct |
30220261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 79679 - 79601
Alignment:
| Q |
276 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttg |
354 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || |||||||||||||||||||||||| |
|
|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttg |
79601 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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