View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_2 (Length: 486)
Name: NF12899_low_2
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3922239 - 3922004
Alignment:
| Q |
1 |
agctacatttatatttttggtgtt--gtgttgtttgtctccatgttacatattttgttcctcttaaagttatcatcttcccttgcatatttatttatcta |
98 |
Q |
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| T |
3922239 |
agctacatttatatttttggtgttctgtgttgtttgtctccctgttacatattttgttcctcttaaagttatcatcttcccttgcatatttatttatcta |
3922140 |
T |
|
| Q |
99 |
agacatccaagatttagaagcaatacaccttggagagctgagaacatcttcaggagattgccctccaagcaagcttttatactatgatgacatggcatgt |
198 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
3922139 |
agacatccaagatttagaagcaatacaccttggcatgctgagaacatcttcaggagattgccctccaagcaagcttttatactgtgatgacatggcatat |
3922040 |
T |
|
| Q |
199 |
ttagattgggatattagtctttctagcgttatttag |
234 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
3922039 |
ttagattgggatattagtctttctagagttatttag |
3922004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 306 - 480
Target Start/End: Complemental strand, 3921940 - 3921767
Alignment:
| Q |
306 |
ccttcgcggggatttgaactccaatcctttgaatatcggtataacccttttctaaatattcttccttttcttgatttcttgannnnnnnnctccccatat |
405 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3921940 |
ccttcacgaggatttgaactccaatcctttgaatatcggtataacccttttctaaatattcttccttttcttgatttcttgattttttt-ctccccatat |
3921842 |
T |
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| Q |
406 |
atagaataagggtttgcaatttatttttgtttatcaccctatgaagcaattaagcttaagcaagattctcctttg |
480 |
Q |
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| T |
3921841 |
atagaataagggtttgcaatttatgtttgtttatcaccctatgaagcaattaagcttaagcaagatactcctttg |
3921767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 34958404 - 34958610
Alignment:
| Q |
11 |
atatttttggtgttgtgttgtttgtctccatgttacatattttgttcctcttaaagttatcatcttcccttgcatatttatttatctaagacatccaaga |
110 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958404 |
atatttttggtgttgtgttgtttgtatccatgttacatattttgttcctcttaaagttatcatcttcccttgcatatttatttatctaagacatccaaga |
34958503 |
T |
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| Q |
111 |
tttagaagcaatacaccttggagagctgagaacatcttcaggagattgccctccaagcaagcttttatactatgatgacatggcatgtttagattgggat |
210 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34958504 |
tttagaagcaatacac------------------tc-tcaggagattgccctccaagcaagcttttatactgtgatgacatggcatgtttagattgggat |
34958584 |
T |
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| Q |
211 |
attagtctttctagcgttatttagca |
236 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
34958585 |
attagtctttctagtgttatttagca |
34958610 |
T |
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