View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_21 (Length: 362)
Name: NF12899_low_21
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_21 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 22271111 - 22270750
Alignment:
| Q |
1 |
agacaattaacttactaccttgttactttgcacgatttgatgcacttgccaattttactaaaatcactatcactccacttagtagaaatcacaacaccac |
100 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||| |
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| T |
22271111 |
agacgattaacttactaccttattactttgcacgatttgatgcacttgccaatttcactaaaatcattatcactccccttagtagaaatcataacaccac |
22271012 |
T |
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| Q |
101 |
cgttcttcctccaactcctaaaggggaggttactctagttcaagggaatcaagagattcctcaagcttcaacaatcctccataattccaaccgtctttcg |
200 |
Q |
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| T |
22271011 |
cgttcttcctccaactcctaaaggggaggttactctagttcaagggaatcaagagattcctcaagcttcaacaatcctccataattccaaccgcctttcg |
22270912 |
T |
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| Q |
201 |
tccatcagaacgagcaagaccaaaatcaccaagtgcgattttttcaactctcagtagcacagttcagcgtcactaatctgaacgatgttcttgcaaacat |
300 |
Q |
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| T |
22270911 |
ttaatcagaacgagcaagaccaaaatcaccaagtgcgattctttcaactctcagtagcacagttcgacgtcacttatttgaatgatgttcttgcaaacat |
22270812 |
T |
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| Q |
301 |
cacaaacattgtcaacctactccaacaacaaaatgtgagtctctcctgagtagaagaaaatc |
362 |
Q |
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| T |
22270811 |
cacaaacattgtcaacttactccagcaacaaaatgtgagtctctcctgagtagaagaaaatc |
22270750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18494616 - 18494564
Alignment:
| Q |
3 |
acaattaacttactaccttgttactttgcacgatttgatgcacttgccaattt |
55 |
Q |
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| T |
18494616 |
acaataaacttactaccttattacttgttacgatttggtgcacttgccaattt |
18494564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 31111773 - 31111835
Alignment:
| Q |
300 |
tcacaaacattgtcaacctactccaacaacaaaatgtgagtctctcctgagtagaagaaaatc |
362 |
Q |
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| T |
31111773 |
tcacaaacattgtcaacctactccaacaatagaatgcgtgtctcactcaagtagaagaaaatc |
31111835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 22512011 - 22512053
Alignment:
| Q |
32 |
acgatttgatgcacttgccaattttactaaaatcactatcact |
74 |
Q |
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| T |
22512011 |
acgatttggtgcacttgccaatttcactaaaatcaccatcact |
22512053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14921200 - 14921131
Alignment:
| Q |
1 |
agacaattaacttactaccttgttactttgcacgatttgatgcacttgccaattttactaaaatcactat |
70 |
Q |
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| T |
14921200 |
agacgattaactcattactttattattttgtacgatttgatgcacttaccaatttatctaaaatcactat |
14921131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 33083662 - 33083616
Alignment:
| Q |
6 |
attaacttactaccttgttactttgcacgatttgatgcacttgccaa |
52 |
Q |
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| T |
33083662 |
attaacttactactctattactttgtacgatttgatgcacttgccaa |
33083616 |
T |
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