View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12899_low_22 (Length: 355)
Name: NF12899_low_22
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_22 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 13047025 - 13047371
Alignment:
| Q |
9 |
gagaagaacaaagaggtaacgaagaaaaattgcgaagaaaagagtgggggtcggggaagtgtagttaatgaagcgataagtgttggnnnnnnngagcgga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
13047025 |
gagaagaacaaagaggtaacgaagaaaaatcacgaagaaaagagtgggggtcggggaagtgtagttaatgaagcgataagtgttggaaaaaaagagaaga |
13047124 |
T |
|
| Q |
109 |
accagtcacaaggcagcgagaaaagaagatcaagtttgcaggatcgaacctcaactgctgccggaacaacaaannnnnnnacacgatgccaaaaaagtca |
208 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
13047125 |
accagtcacaaggcagtgagaaaagcagaccaagttggcaggatcgaacctcaactgccgccggaacaacaattttttttacatgatgccaaaaaagtca |
13047224 |
T |
|
| Q |
209 |
gattcatcacaaaaaatcttccaccatacaaaagacatgcacgacaagttggactctaaaatgttttccagattttttgtgcatcgacaatggcaactac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13047225 |
gattcatcacaaaaaatcttccaccatacaaaagacatgcatgacaagttggactctaaaatgttttccagattttttgtgcattgacaatggcaactac |
13047324 |
T |
|
| Q |
309 |
tagaacttctcaatcaaaagcacttcatcaattttggcatcaaattc |
355 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13047325 |
tggaacttctcaatcaaaagcacttcatcaatttcggcatcaaattc |
13047371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 6429389 - 6429288
Alignment:
| Q |
250 |
cgacaagttggactctaaaatgttttccagattttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttggcatc |
349 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| | | ||||| ||||||| ||| ||| ||||||| | ||||||||||||| |||| | |
|
|
| T |
6429389 |
cgacaagttggactc--aaatgtttttcagattttttgtgctttaataatgg-aactactggaatttcccaatcaatataacttcatcaatttcggcaac |
6429293 |
T |
|
| Q |
350 |
aaatt |
354 |
Q |
| |
|
||||| |
|
|
| T |
6429292 |
aaatt |
6429288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 12839994 - 12839890
Alignment:
| Q |
250 |
cgacaagttggactctaaaatgttttccaga-ttttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttggcat |
348 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||| ||| | || ||||| ||||||| ||| ||| ||||||| | ||||||| ||||| |||| |
|
|
| T |
12839994 |
cgacaagttggactctcaaatgtttttcagatttttttatgctttgataatgg-aactactggaatttcccaatcaatataacttcataaatttcggcaa |
12839896 |
T |
|
| Q |
349 |
caaatt |
354 |
Q |
| |
|
|||||| |
|
|
| T |
12839895 |
caaatt |
12839890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 29405066 - 29405002
Alignment:
| Q |
245 |
atgcacgacaagttggactctaaaatgttttccagattttttgtgcatcgacaatggcaactact |
309 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||| | |||| | || ||||||||||||| |
|
|
| T |
29405066 |
atgcacggcaagttggactctcaaatgtttttcagatttctcgtgctttgataatggcaactact |
29405002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 26094633 - 26094593
Alignment:
| Q |
250 |
cgacaagttggactctaaaatgttttccagattttttgtgc |
290 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
26094633 |
cgacaagttggactctcaaatgttttttagattttttgtgc |
26094593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University