View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_23 (Length: 347)
Name: NF12899_low_23
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 42239586 - 42239255
Alignment:
| Q |
18 |
atcaatgagatactgcatgctaactgtctatgtttggtacatatatgttttagtgcgaacaaagtagttttggtaggatgaagaaggtggtgtaaac--- |
114 |
Q |
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| T |
42239586 |
atcaatgagatattgcatgctaac-----atgtttggtacatatatgttttagtgcgaacaaagtagttttggtaggatgaagaaggtggtgtaaacaat |
42239492 |
T |
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| Q |
115 |
-----ttccttcattccaaactctgattgttcctacaaattagaaatgannnnnnnagggtttgggtgggccacggcccatccaagccaatgaatggctc |
209 |
Q |
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| T |
42239491 |
ttagattccttcaatccaaactctgattgttccaacaaattagaaatgatttttt-agggtttgggtgggccacggcccatccaagccaatgaatggctc |
42239393 |
T |
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| Q |
210 |
cgccactgtgcactgccatcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaat |
309 |
Q |
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| T |
42239392 |
cgccactgtgcactgccatcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaat |
42239293 |
T |
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| Q |
310 |
ttgatgaaattgatcatcatcaaaattgaatccttttt |
347 |
Q |
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| T |
42239292 |
ttgatgaaattgatcgtgatcaaaattgaatccttttt |
42239255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 17649959 - 17649869
Alignment:
| Q |
240 |
atatttacacctaacaaaagaaatgttaataacacaaatatt---aagaaattggacc-ttttgataatggaatttgatgaaattgatcat |
326 |
Q |
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| T |
17649959 |
atatttacacctaacaaaataaatgttaataacacaaatattaaaaaaaaattggacctttttgataatggaacttgacgaaattgatcat |
17649869 |
T |
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