View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_24 (Length: 333)
Name: NF12899_low_24
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 22270759 - 22270457
Alignment:
| Q |
9 |
gaagaaaatcaagataaaattcctactacaatcccgactcaaatcgaggtcgctcaccaaaatcaacaaaccgctacttaaataaatgtggcagcggatg |
108 |
Q |
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|||||||||||||| ||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
22270759 |
gaagaaaatcaagaaaaaattcctaccacaataccaactcaaatcgaggtcgctcgccaaaatcaacaaaccgctactcaaataaatgtagcagcggatg |
22270660 |
T |
|
| Q |
109 |
ctgcctccgagaaatcggaaatcagaatccataccacaaatatctttctcctgctcatcgtggagaatctcctccacaagactagactcatacggaggag |
208 |
Q |
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|| |||| |||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
22270659 |
ctacctctgagaaatcggaaatcagaatccatgccagaaatgtctttctccttctcatcgtggagaatctcctccacaagactt-----agacggaggag |
22270565 |
T |
|
| Q |
209 |
gaagtagtcatggtcctttttgcgagaggcata-aaaatttcctcctacacgttaatgtcgcgacaagcacagtgacatatctctcgagaaaagccgata |
307 |
Q |
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||||||||||| |||||||| |||||||||||| ||||||||||||| || ||| | ||||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
22270564 |
gaagtagtcatagtccttttcgcgagaggcatagaaaatttcctcctgcatgttgaagtcgcgacaagcacaatgacatatctcccgagaaaaaccgata |
22270465 |
T |
|
| Q |
308 |
tataaaaa |
315 |
Q |
| |
|
|||||||| |
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| T |
22270464 |
tataaaaa |
22270457 |
T |
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