View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12899_low_26 (Length: 314)

Name: NF12899_low_26
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12899_low_26
NF12899_low_26
[»] chr7 (4 HSPs)
chr7 (13-300)||(22788047-22788334)
chr7 (211-268)||(9939417-9939474)
chr7 (211-268)||(10027635-10027692)
chr7 (211-268)||(36698735-36698792)
[»] chr4 (4 HSPs)
chr4 (198-277)||(29800510-29800589)
chr4 (211-268)||(25887276-25887333)
chr4 (211-268)||(29690925-29690982)
chr4 (211-268)||(48694727-48694784)
[»] chr1 (2 HSPs)
chr1 (193-268)||(496962-497037)
chr1 (213-253)||(52090046-52090086)
[»] chr3 (2 HSPs)
chr3 (211-264)||(35656476-35656529)
chr3 (212-268)||(40740229-40740285)
[»] chr2 (2 HSPs)
chr2 (211-259)||(17388037-17388085)
chr2 (211-268)||(26646370-26646428)
[»] scaffold0369 (1 HSPs)
scaffold0369 (211-268)||(14390-14447)
[»] chr8 (2 HSPs)
chr8 (211-268)||(45193850-45193907)
chr8 (193-253)||(4491445-4491505)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 22788334 - 22788047
Alignment:
Q  13 atactcataggtaatacttcttccacattgattatttttctatttgtaataaatgtccacaagcaaaaattagaatacatttagtataacaaagttatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22788334 atactcataggtaatacttcttccacattgattatttttctatttgtaataaatgtccacaagcaaaaattagaatacatttagtataacaaagttatat 22788235  T
Q  113 attttcagagccaatggcaaagagtattatgtgtttgtttattagttagtttcaagagtcaagatcatgtttgactagtttcagagccgtctttaggaag 212  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  ||||    
T  22788234 tttttcagagccaatggcaaagagtcttatgtgtttgtttattagttagttttaagagtcaagatcatgtttgactagtttcagagccgtctctgtgaag 22788135  T
Q  213 gtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttatatatattatgcatgtaaaatattgatatat 300  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22788134 gtgcaaacagttgtatagagttggacctccaaaattttgggacccaaaatatttttatatatattatgcatgtaaaatatagatatat 22788047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 9939474 - 9939417
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||    
T  9939474 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatattttt 9939417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 10027635 - 10027692
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||    
T  10027635 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatattttt 10027692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 36698792 - 36698735
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||    
T  36698792 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatattttt 36698735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 29800589 - 29800510
Alignment:
Q  198 gccgtctttaggaaggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttatatatatt 277  Q
    |||||||||| | | |||||||||||||||||||||||| |||||  |||||| ||  ||||||||||||| ||| ||||    
T  29800589 gccgtctttaaggatgtgcaaacagttctatagagttgggcctccccaattttagggtccaaaatatttttttatttatt 29800510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 25887333 - 25887276
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||    
T  25887333 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatattttt 25887276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 29690982 - 29690925
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||    
T  29690982 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatattttt 29690925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 48694727 - 48694784
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||    
T  48694727 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatattttt 48694784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 497037 - 496962
Alignment:
Q  193 tcagagccgtctttaggaaggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||| ||||||  |||| |||||||||||  ||||||||||||| |||||  ||||||||| ||||||||||||||    
T  497037 tcagggccgtccctagggaggtgcaaacaactctatagagttgggcctccccaattttggggcccaaaatattttt 496962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 52090046 - 52090086
Alignment:
Q  213 gtgcaaacagttctatagagttggacctccaaaattttggg 253  Q
    |||||||||| ||||| ||||||| ||||||||||||||||    
T  52090046 gtgcaaacagctctatggagttgggcctccaaaattttggg 52090086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 35656529 - 35656476
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatat 264  Q
    |||||||||||| ||||||||| |||||||||  ||||||||| ||||||||||    
T  35656529 aggtgcaaacagctctatagagctggacctccccaattttggggcccaaaatat 35656476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 40740229 - 40740285
Alignment:
Q  212 ggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    ||||||||||| ||||  ||||||| ||||| |||||||| | ||||||||||||||    
T  40740229 ggtgcaaacagctctactgagttgggcctcctaaattttgaggcccaaaatattttt 40740285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 17388085 - 17388037
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaa 259  Q
    |||||||||||| |||||||||||||||||||  ||||||||| |||||    
T  17388085 aggtgcaaacagctctatagagttggacctcctcaattttggggcccaa 17388037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 26646370 - 26646428
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttggga-cccaaaatattttt 268  Q
    |||||||||||| ||||||||| ||| |||||  |||||||||| ||||||||||||||    
T  26646370 aggtgcaaacagctctatagagctgggcctccccaattttgggagcccaaaatattttt 26646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 14390 - 14447
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||    
T  14390 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatattttt 14447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 45193907 - 45193850
Alignment:
Q  211 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 268  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||    
T  45193907 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatattttt 45193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 4491445 - 4491505
Alignment:
Q  193 tcagagccgtctttaggaaggtgcaaacagttctatagagttggacctccaaaattttggg 253  Q
    |||| ||||||| | || |||||||||||| ||||| |||||||||||||  |||||||||    
T  4491445 tcagggccgtctatggggaggtgcaaacagctctattgagttggacctccccaattttggg 4491505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University