View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_28 (Length: 299)
Name: NF12899_low_28
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_28 |
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| [»] scaffold0606 (1 HSPs) |
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Alignment Details
Target: scaffold0606 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 4214 - 3947
Alignment:
| Q |
16 |
tgtgtacttgtagagagtacaatagtagacaccctagtagcaatgatgccgagtataacactaggctttggtattctgtcaaagtgatgatttgtaaatg |
115 |
Q |
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| T |
4214 |
tgtgtacttgtaaagagtacaatagtaaacaccctagtagcgatgatgctgagtagaacactaggctttggtattctgtcaaagtgatgatttgtaaatg |
4115 |
T |
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| Q |
116 |
atctcagagtctatattagtttataaattatggatgcaatatgagaacaatgaaatgtctttaaggatcacaatatcataaaatttgattttgattcaac |
215 |
Q |
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| T |
4114 |
atctcagagtctatattagtttataaattatggatgcaatatgagaacaatgaaatgtctttaaggatcacaatatcataaaatttgattttgattcacc |
4015 |
T |
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| Q |
216 |
tattaacatatgcataatgacttatctaaaatatggtagttctgatgatcttgatggtgcaattttat |
283 |
Q |
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| T |
4014 |
tattaacatatgcataatgacttatctaaaatatggtagtcctgacgatcttgatggtgcaattttat |
3947 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 20649259 - 20649303
Alignment:
| Q |
189 |
tatcataaaatttgattttgattcaactattaacatatgcataat |
233 |
Q |
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| T |
20649259 |
tatcataaaatttgattttgattcaactattaaaatatgtataat |
20649303 |
T |
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