View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_33 (Length: 250)
Name: NF12899_low_33
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 29144798 - 29144556
Alignment:
| Q |
8 |
tgagatgaagaacgtggagcagtgatagtcttggaagtgcttcttcttgaatcattgataatagggttgtggcgatcaatgactttgcctccaagttgaa |
107 |
Q |
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| T |
29144798 |
tgagaagaagaacatggagcagtgatagtcttggaagtgcttcttcttgaatcattgataatagggttgtggcgatcaatgactttgcctccaagttgaa |
29144699 |
T |
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| Q |
108 |
tggtatttgaagaggagcatgaagcttgttccatgctaagacatattgctgttgaggcttgtgaagcacagaagatatccattcttttcatcttttggat |
207 |
Q |
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| T |
29144698 |
tggtatttgaagaggagcatgaagcttgttccatgctaagacatattgctgttgaggcttgtgaagcacagaagatatccattcttttcatcttttggat |
29144599 |
T |
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| Q |
208 |
aacaaaaacaaagaaatttagtgcttcttaaaagaatctatag |
250 |
Q |
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| T |
29144598 |
aacaaaaacaaagaaatttagtgcttcttaaaagaatctatag |
29144556 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 40453339 - 40453277
Alignment:
| Q |
144 |
taagacatattgctgttgaggcttgtgaagcacagaagatatccattcttttcatcttttgga |
206 |
Q |
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| T |
40453339 |
taagacatatggctgttgaggcttgtgatgcacagaagatttcaatgcctttcattttttgga |
40453277 |
T |
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