View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12899_low_36 (Length: 240)
Name: NF12899_low_36
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 2223414 - 2223209
Alignment:
| Q |
18 |
acaaagcaccgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccacagccgccgtcgaacccacggtattcccatcaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223414 |
acaaagcaccgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccacagccgccgtcgaacccacggtattcccatcaacc |
2223315 |
T |
|
| Q |
118 |
tcatcaccacaacttccaccgactccaatttcactatccattttcataaaacaagaacacatagcttcacaccaatccaatccatgattcctcctaccct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223314 |
tcatcaccacaacttccaccgactccaatttcactatccatcttcataaaacaagaacacatagcttcacaccaatccaatccatgattcctcctaccct |
2223215 |
T |
|
| Q |
218 |
ccttca |
223 |
Q |
| |
|
|||||| |
|
|
| T |
2223214 |
ccttca |
2223209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University