View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_37 (Length: 237)
Name: NF12899_low_37
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 42239274 - 42239106
Alignment:
| Q |
47 |
atcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacact |
146 |
Q |
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| T |
42239274 |
atcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacact |
42239175 |
T |
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| Q |
147 |
aacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtg |
215 |
Q |
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| T |
42239174 |
aacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtg |
42239106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 57 - 215
Target Start/End: Complemental strand, 1328659 - 1328504
Alignment:
| Q |
57 |
aatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagacc |
156 |
Q |
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| T |
1328659 |
aatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagttttgctctcttccaaatacgtttaatgacactaacagagact |
1328563 |
T |
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| Q |
157 |
gaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtg |
215 |
Q |
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| T |
1328562 |
gaatacattgacgcaatcaattttctagtcccttttttcagtcttcctacatggttgtg |
1328504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 42540896 - 42541040
Alignment:
| Q |
57 |
aatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagacc |
156 |
Q |
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| T |
42540896 |
aatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagttttgctctcttccaaatacgtttaatgacactaacagagact |
42540992 |
T |
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| Q |
157 |
gaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
204 |
Q |
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| T |
42540993 |
gaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
42541040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 17649858 - 17649719
Alignment:
| Q |
57 |
aatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagacc |
156 |
Q |
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| T |
17649858 |
aatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagtttttctctcttccaaatacgtttaatgacactaacagagact |
17649762 |
T |
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| Q |
157 |
gaatacattgacacaatcaattttctagtcccttttttcagtc |
199 |
Q |
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| T |
17649761 |
gaatacattgacgcaatcaattttctagtcccttttttcagtc |
17649719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 4745952 - 4745900
Alignment:
| Q |
152 |
agaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
204 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
4745952 |
agactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
4745900 |
T |
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