View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12899_low_4 (Length: 468)
Name: NF12899_low_4
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12899_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 23 - 335
Target Start/End: Complemental strand, 49083160 - 49082847
Alignment:
| Q |
23 |
accgaagccagacattgaaagtgtaaatagaacattaataatgaaatccgctgaggtaaaagttagctgttgtttcacaactaacagtctgaaactgaca |
122 |
Q |
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| T |
49083160 |
accgaagccagacattgaaagtgtaaatagaatattaataatgaaatccgctgaggtaaaagttaactgttgtttcacaactaacagtctgaaactgaca |
49083061 |
T |
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| Q |
123 |
tatctaacaatcctattacactgcttcagtgaaatttagatggcgtgcataggcaaaacttacatgaggctcactatt-ttttcactgcattcaatattt |
221 |
Q |
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| T |
49083060 |
tatctaacaatcctattacactgcttcagtgaaatttagatggcgtgcataggcaaaacttacatgaggctcactatttttttcactgcattcaatattt |
49082961 |
T |
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| Q |
222 |
ttgtgtgtggaagccacggaaccactagaatgattgcttgcagcattgttttctgcagcaacatcaagtttattctgtggaaatgttatgttttgaggag |
321 |
Q |
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| T |
49082960 |
ttgtgtgtggaagccacagaaccactagaatgattgcttgcagcattgttttctgcagcaacatcaagtttattctgtggaaatgttatattttgaggag |
49082861 |
T |
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| Q |
322 |
gcatgataatctgt |
335 |
Q |
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| T |
49082860 |
gcatggtaatctgt |
49082847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 49082812 - 49082741
Alignment:
| Q |
382 |
gttggattggaatataagtaagtatattgacattgacatacagtagtatttcttctccacacatgctgccacaggttc |
459 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
49082812 |
gttggattggaatataaataagtatattgacat------acagtagtatttcttctccacacatgctgccacaagttc |
49082741 |
T |
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