View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12899_low_7 (Length: 440)

Name: NF12899_low_7
Description: NF12899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12899_low_7
NF12899_low_7
[»] chr7 (30 HSPs)
chr7 (90-320)||(8610644-8610874)
chr7 (70-265)||(8602694-8602889)
chr7 (70-315)||(8591358-8591603)
chr7 (76-306)||(29581071-29581301)
chr7 (85-316)||(29576885-29577116)
chr7 (78-271)||(8647669-8647862)
chr7 (70-301)||(7876745-7876976)
chr7 (76-294)||(8582629-8582847)
chr7 (72-302)||(8635409-8635639)
chr7 (110-271)||(3148371-3148532)
chr7 (120-283)||(8660254-8660417)
chr7 (76-302)||(8538770-8538996)
chr7 (107-294)||(8577286-8577473)
chr7 (132-293)||(8655371-8655532)
chr7 (78-271)||(8668433-8668626)
chr7 (123-271)||(13332091-13332239)
chr7 (120-271)||(1302321-1302472)
chr7 (99-232)||(27829325-27829458)
chr7 (120-271)||(6790420-6790571)
chr7 (120-271)||(10492942-10493093)
chr7 (98-320)||(8546663-8546885)
chr7 (76-294)||(8572556-8572774)
chr7 (120-271)||(8584477-8584628)
chr7 (120-271)||(8630238-8630389)
chr7 (76-172)||(8568804-8568900)
chr7 (108-196)||(17261390-17261478)
chr7 (108-274)||(17269098-17269264)
chr7 (120-197)||(8104075-8104152)
chr7 (216-271)||(8560801-8560856)
chr7 (120-197)||(8016308-8016385)
[»] chr1 (4 HSPs)
chr1 (98-301)||(34465159-34465362)
chr1 (120-289)||(4677463-4677632)
chr1 (120-278)||(15596069-15596227)
chr1 (221-293)||(52549016-52549088)
[»] chr2 (9 HSPs)
chr2 (120-301)||(16656511-16656692)
chr2 (107-293)||(12257833-12258019)
chr2 (120-271)||(43626330-43626481)
chr2 (107-271)||(12244344-12244508)
chr2 (99-265)||(12235787-12235953)
chr2 (107-271)||(14705460-14705624)
chr2 (99-271)||(7543266-7543438)
chr2 (111-172)||(12000334-12000395)
chr2 (107-265)||(16661013-16661171)
[»] chr5 (2 HSPs)
chr5 (117-271)||(28220954-28221108)
chr5 (120-294)||(42554105-42554279)
[»] chr4 (5 HSPs)
chr4 (78-262)||(9323014-9323198)
chr4 (78-262)||(9377493-9377677)
chr4 (78-262)||(9334986-9335169)
chr4 (107-278)||(35133451-35133622)
chr4 (107-172)||(30776114-30776179)
[»] chr8 (1 HSPs)
chr8 (76-308)||(12529834-12530066)
[»] chr6 (3 HSPs)
chr6 (120-151)||(28911324-28911355)
chr6 (230-271)||(11159754-11159795)
chr6 (230-271)||(11198306-11198347)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 8610644 - 8610874
Alignment:
Q  90 gtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttcctt 189  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8610644 gtgttagctgggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttcctt 8610743  T
Q  190 gttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcata 289  Q
    | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||    
T  8610744 gctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtccctcata 8610843  T
Q  290 ttttttggccattctctttctagtgaatgaa 320  Q
    |||||||||||||||||||||||||||||||    
T  8610844 ttttttggccattctctttctagtgaatgaa 8610874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 70 - 265
Target Start/End: Original strand, 8602694 - 8602889
Alignment:
Q  70 aagataaattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaaga 169  Q
    |||||||||||||| ||||||||||  ||||||| |||||||| || ||||| ||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  8602694 aagataaattaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaaga 8602793  T
Q  170 aggagtggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtc 265  Q
    |||||| |||||||||||||| ||||| |  ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||    
T  8602794 aggagtagttctgtttccttgatcattgtgaataatctctgccctgttgttttggtcctgccaaacagctacacatgaataggttgttccaaggtc 8602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 70 - 315
Target Start/End: Original strand, 8591358 - 8591603
Alignment:
Q  70 aagataaattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaaga 169  Q
    |||||||||||||  ||| |||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||    
T  8591358 aagataaattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaaga 8591457  T
Q  170 aggagtggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgatt 269  Q
    ||| ||  |||| |||||||| ||||| |  |||||||||||| | |||||||| |||||||| || || ||||||||||| |||||||||||||| |||    
T  8591458 aggtgtaattctatttccttgatcattgtgaataatctctgctgtattgttttggtcctgccaaactgctacacatgaatacgttgtgccaaggtcaatt 8591557  T
Q  270 ccgatagcaggtccctcatattttttggccattctctttctagtga 315  Q
    || || || || ||||  | |||||||||||| |||| || |||||    
T  8591558 ccaattgctggacccttgtgttttttggccatcctctctcaagtga 8591603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 76 - 306
Target Start/End: Complemental strand, 29581301 - 29581071
Alignment:
Q  76 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagt 175  Q
    |||||||| |||||||||| | ||||||||  ||||| || ||||||||||||| || |||||||||  |    |||| |||||| |||| |||||| ||    
T  29581301 aattaccaaagatagtgtttgttgggtttgcggcagcctgatttttagcagcattactaatcaacctcagtgagtcagtgaaagctacaacagaaggtgt 29581202  T
Q  176 ggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgata 275  Q
    |||||  || ||||| ||||| | ||| ||||| |||| |||| | |  |||||||| || || |||||||||||||||||||| |||||||||||||||    
T  29581201 ggttccattgccttgatcattgtggatgatctcagctcggttgatattctcctgccaaactgctacacatgaataggttgtgccgaggtcgattccgata 29581102  T
Q  276 gcaggtccctcatattttttggccattctct 306  Q
    |||||||| ||||||||||||||||||||||    
T  29581101 gcaggtccttcatattttttggccattctct 29581071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 316
Target Start/End: Complemental strand, 29577116 - 29576885
Alignment:
Q  85 agatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtt 184  Q
    |||||||||| | ||||||||| ||||| || ||||||||||||| |||||| |||||| |   ||||| |||||| |||| |||||| |||||||| ||    
T  29577116 agatagtgttggttgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctatt 29577017  T
Q  185 tccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccc 284  Q
     ||||| ||||| | ||| ||||| ||||  |||||  | | |||||| || || || ||||||||||| ||||||||||||||||| || ||||||||     
T  29577016 gccttgatcattgtggatgatctcagctcgattgttacgctgctgccaaactgctacgcatgaataggtcgtgccaaggtcgattccaatggcaggtcct 29576917  T
Q  285 tcatattttttggccattctctttctagtgaa 316  Q
    |||||||||||||||||||| |||| ||||||    
T  29576916 tcatattttttggccattctgtttcaagtgaa 29576885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 78 - 271
Target Start/End: Original strand, 8647669 - 8647862
Alignment:
Q  78 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 177  Q
    |||||| ||| |||||| |  ||||| |||||||| || |||||||| |||||||||||||||||||||||||| | |||||||||||||||||| || |    
T  8647669 ttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtag 8647768  T
Q  178 ttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||||||||||||| ||||| |  ||||||||  |||| |||| ||  ||  |||| ||||||||||| ||||| ||||| |||||||| |||||    
T  8647769 ttctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctattcc 8647862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 301
Target Start/End: Complemental strand, 7876976 - 7876745
Alignment:
Q  70 aagataaattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaaga 169  Q
    ||||||| |||||| ||| |||||| | |||||| || ||||| || ||||| ||||||||||||||||||||||||||||  | |||||||||||||||    
T  7876976 aagataagttaccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaaga 7876877  T
Q  170 aggagtggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgatt 269  Q
    ||| || |||||||| ||||||||||| |  ||||| ||  |||| |||| ||  ||  |||| ||||||||||| ||||| ||||| |||||||| |||    
T  7876876 aggtgttgttctgttgccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctatt 7876777  T
Q  270 ccgatagcaggtccctcatattttttggccat 301  Q
    || |  ||| |||| || |||||||| |||||    
T  7876776 cccaccgcacgtccttcgtattttttcgccat 7876745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 294
Target Start/End: Original strand, 8582629 - 8582847
Alignment:
Q  76 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagt 175  Q
    ||||||||||||||||||| | |||||| ||||||||||| ||||| ||||||||||||||||| ||||||  || ||  ||||||||| ||||||| ||    
T  8582629 aattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgt 8582728  T
Q  176 ggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgata 275  Q
     ||| |||||||||| ||||| |  || || ||  | |  | |||||| |||||||| ||  |||||||||| |||||||| |||||||| ||||||||     
T  8582729 tgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgccacactccaacacatgagtaggttgtaccaaggtcaattccgatt 8582828  T
Q  276 gcaggtccctcatattttt 294  Q
    |||  ||||| ||||||||    
T  8582829 gcaaatcccttatattttt 8582847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 302
Target Start/End: Complemental strand, 8635639 - 8635409
Alignment:
Q  72 gataaattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaag 171  Q
    ||||| |||||| ||| ||| || | |||||| || | ||| |||||||| |||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  8635639 gataagttaccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaag 8635540  T
Q  172 gagtggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    | ||| ||||||| ||||| ||||| | ||| ||||| || |  ||  ||||    | ||| || || ||||||||||| ||||||||||||||||||||    
T  8635539 gtgtgattctgttcccttgctcattgtggatgatctcagcccgattaatttgactatcccaaactgctacacatgaatatgttgtgccaaggtcgattcc 8635440  T
Q  272 gatagcaggtccctcatattttttggccatt 302  Q
     || ||||||||||| |||||||||||||||    
T  8635439 aattgcaggtccctcgtattttttggccatt 8635409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 3148371 - 3148532
Alignment:
Q  110 agcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctct 209  Q
    |||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| ||||| ||||| |  ||||||||     
T  3148371 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctca 3148470  T
Q  210 gctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
     |||||||||  |  ||  |||| |||||||| || ||||| ||||| ||||||||||||||    
T  3148471 actctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcc 3148532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 120 - 283
Target Start/End: Original strand, 8660254 - 8660417
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| ||||| || ||| |||||||||| || || ||||| |||||  |||  ||||    
T  8660254 ttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactcgattgt 8660353  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtcc 283  Q
      |  ||| |||| ||||||||||| ||||||||||| |||||||| ||||| |||||| ||||    
T  8660354 gattctccagccacacagcaacacacgaataggttgttccaaggtctattccaatagcacgtcc 8660417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 76 - 302
Target Start/End: Original strand, 8538770 - 8538996
Alignment:
Q  76 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagt 175  Q
    |||||||| ||| |||||| | |||||| || | |||||| ||||| ||||||||||||||||| | ||||  || |   ||| ||||| ||||||| ||    
T  8538770 aattaccaaagacagtgtttgttgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgt 8538869  T
Q  176 ggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgata 275  Q
    |||| |||||||||| || || |  || |||||  | |  | |||||| |||||||| ||  |||||||||| ||||| ||||||||||| |||||||||    
T  8538870 ggttttgtttccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcgtgccaaggtcaattccgata 8538969  T
Q  276 gcaggtccctcatattttttggccatt 302  Q
    |||| ||||||||||||||| ||||||    
T  8538970 gcagctccctcatatttttttgccatt 8538996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 107 - 294
Target Start/End: Original strand, 8577286 - 8577473
Alignment:
Q  107 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatc 206  Q
    ||||||||| ||||| |||||||| |||||||| ||||||  ||  |  ||||||||| ||||||||||||||||||||||||| ||||| |  |||||     
T  8577286 agcagcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatt 8577385  T
Q  207 tctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcatattttt 294  Q
    ||| | |  | ||||||||| ||||||||  |||||||||| || || ||||||||||| ||||| || |||  |||||| |||||||    
T  8577386 tctacacgatcgttttgttcatgccatactccaacacatgagtaagtcgtgccaaggtcaattccaatggcaactccctcgtattttt 8577473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 132 - 293
Target Start/End: Original strand, 8655371 - 8655532
Alignment:
Q  132 ccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgcc 231  Q
    |||||||||||||||| ||||| ||||||||||| |||||| || ||||| || ||||| ||||| |  ||||||||  |||| ||||  |  ||  |||    
T  8655371 ccaatcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagcc 8655470  T
Q  232 atacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcatatttt 293  Q
    | ||||||||||||||||||||||| || ||||| ||||||| |||| ||||||| ||||||    
T  8655471 acacagcaacacatgaataggttgttccgaggtctattccgacagcacgtccctcgtatttt 8655532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 78 - 271
Target Start/End: Original strand, 8668433 - 8668626
Alignment:
Q  78 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 177  Q
    |||||| ||||||||||  | ||||| | ||||| ||| || ||||||||||| |||||||||||||| ||||    |||||||||||||||||| ||      
T  8668433 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgtta 8668532  T
Q  178 ttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||| ||||||||| ||||| |  ||||||||  |||| | || ||| ||  |||| ||||||||||||||||||||||| ||||| || |||||    
T  8668533 ttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttccaagatctattcc 8668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 13332239 - 13332091
Alignment:
Q  123 gcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgtttt 222  Q
    ||||||||||||||||| ||||||||||    |||||||||||||||||| || ||||| |||||||| ||||| |  ||||||||  |||| | || ||    
T  13332239 gcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatctcaactctttggtgtt 13332140  T
Q  223 gttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
      ||  |||| |||||||||||||| |||||||| ||||||||||||||    
T  13332139 catcaagccacacagcaacacatgagtaggttgttccaaggtcgattcc 13332091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 1302321 - 1302472
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||||||| || || ||| |||| ||||| || || ||||| |||||| |||| ||||    
T  1302321 ttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgt 1302420  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
      |  ||| |||| ||||||||||| ||||| || || |||||||| |||||    
T  1302421 gattctccagccacacagcaacacacgaataagtagttccaaggtctattcc 1302472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 27829458 - 27829325
Alignment:
Q  99 gggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattat 198  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| || |  || | |||||||||| ||||||| || ||  |||| ||||||||||| |    
T  27829458 gggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgtcttgttgccttgttcattgt 27829359  T
Q  199 agataatctctgctctgttgttttgttcctgcca 232  Q
      ||||||||  ||||||||| ||| ||||||||    
T  27829358 gaataatctccactctgttgtgttgatcctgcca 27829325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 6790420 - 6790571
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    |||||||||||||| ||||||||||| ||||| | |||||||||||||||||| |||||| |||| ||||| ||||| |  ||||||||  |||| ||||    
T  6790420 ttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatctcaactctattgt 6790519  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
     ||  ||  |||| ||| ||||||| ||||| ||||| || ||||| |||||    
T  6790520 gttcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcc 6790571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 271
Target Start/End: Complemental strand, 10493093 - 10492942
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    |||||||||||||| ||||||||||||||||    |||||||||||||||||| || ||||| |||||||| ||||| |  ||||| ||  |||| | ||    
T  10493093 ttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatttcaactctttggt 10492994  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
     ||  ||  ||||||||||||||||||| |||||||| ||||| || |||||    
T  10492993 gttcatcaagccatacagcaacacatgagtaggttgttccaagatctattcc 10492942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 320
Target Start/End: Original strand, 8546663 - 8546885
Alignment:
Q  98 tgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatta 197  Q
    |||||| |||| ||| || ||||| |||||||||||||||| ||||||   ||  | |||||||||| ||||||| || ||| |||||||||| |||||     
T  8546663 tgggttagaagaagcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattg 8546762  T
Q  198 tagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcatattttttgg 297  Q
    |  || || ||  | |  | ||| || |||||||||||  |||||||||| || || ||||||||||| |||||||| |||  ||||||||||||||| |    
T  8546763 tgaatgatttccacacgatcgttctgctcctgccatactccaacacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcatatttttttg 8546862  T
Q  298 ccattctctttctagtgaatgaa 320  Q
    ||||| |  ||| ||||||||||    
T  8546863 ccattgtgcttcaagtgaatgaa 8546885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 294
Target Start/End: Original strand, 8572556 - 8572774
Alignment:
Q  76 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagt 175  Q
    |||||||| ||||||| || | ||| || | ||||||||| ||||| ||||||||||| ||||| ||||||  || ||  ||||||||| |||| |||||    
T  8572556 aattaccaaagatagtattggatggattagtagcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagt 8572655  T
Q  176 ggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgata 275  Q
     |||||||||||||| ||||| |  || || ||  | |  |  ||||| |||||||| ||  |||||||||| || || ||||||||||| ||||||||     
T  8572656 tgttctgtttccttggtcattgtgtatgatttcaacacgatcattttgctcctgccacactccaacacatgagtaagtcgtgccaaggtcaattccgatc 8572755  T
Q  276 gcaggtccctcatattttt 294  Q
    |||  ||||||||||||||    
T  8572756 gcaactccctcatattttt 8572774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 271
Target Start/End: Complemental strand, 8584628 - 8584477
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    ||||||||| |||||| ||||||||||||||| |  ||||||||||| ||||| ||| || | || ||||  || || |  ||||||||  ||||||| |    
T  8584628 ttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactctgttct 8584529  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||| ||||  ||| ||| ||||||| ||||||||||| |||||||| |||||    
T  8584528 tttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcc 8584477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 8630238 - 8630389
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    ||||||||| |||||| ||||||||||||||| |  |||||||| || ||||| ||| || | || ||||  ||||| |  ||||||||  ||||||| |    
T  8630238 ttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgccttcatcattgtgaataatctcaactctgttct 8630337  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||| ||||  ||| ||| ||||||| ||||||||||| |||||||| |||||    
T  8630338 tttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcc 8630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 8568804 - 8568900
Alignment:
Q  76 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 172  Q
    |||||||| || ||||||| | ||| || ||||||||||| ||||| ||||||||||||||||| ||||||   | || |||||||||| |||||||    
T  8568804 aattaccaaaggtagtgttggttggattagaagcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaagg 8568900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 17261390 - 17261478
Alignment:
Q  108 gcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatt 196  Q
    |||||||| || ||||| |||||||| |||||||||| ||| | ||  ||||||||||||||||||||  || |||||||||| |||||    
T  17261390 gcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcatt 17261478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 17269098 - 17269264
Alignment:
Q  108 gcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatct 207  Q
    |||||||| || ||||| | |||||| || ||||||| ||| | ||  |||||||||||||| ||||| ||| |||| ||||| ||||| |  |||||||    
T  17269098 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtataatct 17269197  T
Q  208 ctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgat 274  Q
    |  ||||   || || ||| ||||| |||||||||||||| || || || |||||||| ||||||||    
T  17269198 caactctaccgtgttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctattccgat 17269264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 8104075 - 8104152
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatta 197  Q
    |||||||||||||| |||||||||| |  ||||| |||||||||| |||| || || |||||||| ||||| ||||||    
T  8104075 ttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatta 8104152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 8560801 - 8560856
Alignment:
Q  216 ttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    |||||||| |||||||||||  |||||||||| |||||||| |||||||| |||||    
T  8560801 ttgttttgctcctgccatactccaacacatgagtaggttgttccaaggtcaattcc 8560856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 8016385 - 8016308
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatta 197  Q
    |||||||||||||| |||||||||| |  ||||| |||||||||| |||| || || |||| ||| ||||| ||||||    
T  8016385 ttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcatta 8016308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 301
Target Start/End: Complemental strand, 34465362 - 34465159
Alignment:
Q  98 tgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcatta 197  Q
    |||||| | ||||| ||| || |||||||||| ||| ||||| |||||||||| ||  ||||||||||||||||| |||||| |||| ||||| |||||     
T  34465362 tgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattg 34465263  T
Q  198 tagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcatattttttgg 297  Q
    |  ||||||||| ||||  ||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||| | |||| |||| ||| ||||||| |    
T  34465262 tcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagcacgtccttcacattttttcg 34465163  T
Q  298 ccat 301  Q
    ||||    
T  34465162 ccat 34465159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 120 - 289
Target Start/End: Complemental strand, 4677632 - 4677463
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||||||||| || ||| |||| ||||||||||| || ||||||||  |||||||||    
T  4677632 ttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgt 4677533  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcata 289  Q
      |  ||| |||| ||||||||||||||||| || || ||||| || ||||| | |||| |||| |||||    
T  4677532 gattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcata 4677463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 15596069 - 15596227
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||  ||||||||||||| ||||| | |||||||||  |||| || |    
T  15596069 ttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattct 15596168  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagca 278  Q
     ||  ||  |||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||    
T  15596169 gttcatcaagccacacagcaacacaagaatacgttgttccaaggtctattccaatagca 15596227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 52549088 - 52549016
Alignment:
Q  221 ttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcatatttt 293  Q
    |||||||||||||||||||||||||||||| || || | |||||| ||||| | |||| |||| || ||||||    
T  52549088 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatttt 52549016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 301
Target Start/End: Complemental strand, 16656692 - 16656511
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    |||||||||||||| |||||||||||||||| || |||||||||||||||||| || ||||||||||| || ||||| |  || ||||||||||||||||    
T  16656692 ttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgctctgttgt 16656593  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcatattttttggccat 301  Q
       | |||  ||| ||||||||||||||||| ||||| |||||||| ||||| |  ||| |||| |||| |||||| |||||    
T  16656592 gacggtccatccacacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccat 16656511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 107 - 293
Target Start/End: Complemental strand, 12258019 - 12257833
Alignment:
Q  107 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatc 206  Q
    ||||||||| || ||||||||||||||||||||||||||||| | ||  ||||||||| ||||||| || |||||||||||||| || || |  || |||    
T  12258019 agcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatc 12257920  T
Q  207 tctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcatatttt 293  Q
    || ||||     | |||||||||||| |||||||| |||||||| |||||||||||||| ||||| || ||| |||| || ||||||    
T  12257919 tcagctcgacaatattgttcctgccaaacagcaacgcatgaatacgttgtgccaaggtcaattcctatcgcaagtccttcgtatttt 12257833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 43626330 - 43626481
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    |||||||||||||||||||||||||| || | || ||||| |||||||||||| || |||||||||||||| ||||| | |||||||||| ||||  |||    
T  43626330 ttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctgt 43626429  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    |||  ||  |||| ||||||| ||| ||||| ||||| |||||||| |||||    
T  43626430 tttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcc 43626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 107 - 271
Target Start/End: Complemental strand, 12244508 - 12244344
Alignment:
Q  107 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatc 206  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||| || |||||||| || || || || |  || ||     
T  12244508 agcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatt 12244409  T
Q  207 tctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||  | |    || ||||||||||||||| |||||||||||||| ||||| |||||||| |||||    
T  12244408 tcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcc 12244344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 265
Target Start/End: Original strand, 12235787 - 12235953
Alignment:
Q  99 gggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattat 198  Q
    ||||| ||||||||||| || ||||||||||||||||||||||| ||||  || | |||||||||||||||||| || ||||| || ||||| || || |    
T  12235787 gggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgt 12235886  T
Q  199 agataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtc 265  Q
      || |||||  |||    ||  |||||||||||||| |||||||||||||| ||||| ||||||||    
T  12235887 gaatgatctcaactcgagagtgctgttcctgccatactgcaacacatgaatatgttgtaccaaggtc 12235953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 271
Target Start/End: Original strand, 14705460 - 14705624
Alignment:
Q  107 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatc 206  Q
    ||||||||| || ||||||||||||||||||||||  ||||  || | ||||||||||||||||||||| ||||| || ||||| || || |  || ||     
T  14705460 agcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatt 14705559  T
Q  207 tctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||  |||  |  | ||||||||||||||| ||||||||||| || ||||| |||||||| |||||    
T  14705560 tcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcc 14705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 7543266 - 7543438
Alignment:
Q  99 gggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattat 198  Q
    ||||| ||||||||||| || ||||||  |||||| |||||||| ||||  || | |||||||||||||||||| || |||||||| ||||| || || |    
T  7543266 gggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgttctgttgccttggtcgttgt 7543365  T
Q  199 agataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
      || || ||  |||  | || ||| ||||||||||| |||||||| || || |||||||||||||| |||||    
T  7543366 gaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttgtgccaaggtctattcc 7543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 12000334 - 12000395
Alignment:
Q  111 gcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 172  Q
    |||||||||||||||||||||||||  ||||||||||  |||| |||||||||| |||||||    
T  12000334 gcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaagg 12000395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 265
Target Start/End: Complemental strand, 16661171 - 16661013
Alignment:
Q  107 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatc 206  Q
    ||||||||| |  ||||||||| |||| | |||||||||| ||||||  ||||||||||||||||| ||  || |||| ||||  || || | |||||||    
T  16661171 agcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatc 16661072  T
Q  207 tctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtc 265  Q
    ||  ||||||| || | ||||  ||| |||||||||||||| || ||||| || |||||    
T  16661071 tcaactctgtttttctcttccaaccaaacagcaacacatgagtatgttgttcctaggtc 16661013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 28220954 - 28221108
Alignment:
Q  117 tttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgt 216  Q
    |||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||| ||| |||| ||||| ||||| |  ||||||||  | || |    
T  28220954 tttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccctat 28221053  T
Q  217 tgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||| ||  || ||||| ||||||||||||||||| ||||| ||||| || |||||    
T  28221054 tgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctattcc 28221108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 294
Target Start/End: Complemental strand, 42554279 - 42554105
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatctctgctctgttgt 219  Q
    ||||||||||||||||||||||||| || || ||  ||||||||||||||||| || ||| |||| ||||| ||||| |  ||||||||  |||| || |    
T  42554279 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaactctatttt 42554180  T
Q  220 tttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagcaggtccctcatattttt 294  Q
     ||  || | ||| |||| |||||| ||||| ||||| |||||||| ||||| |  ||| |||| ||||||||||    
T  42554179 gttcatcttcccacacagtaacacacgaatacgttgttccaaggtctattcccactgcacgtccttcatattttt 42554105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 9323198 - 9323014
Alignment:
Q  78 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 177  Q
    |||||| ||||||||||  | ||||| | ||||| ||| || |||||||||||||||||||||||||| ||||    |||||||||||||||||| || |    
T  9323198 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9323099  T
Q  178 ttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaag 262  Q
    ||| ||||||||| ||||| |  ||||||||  |||| | || ||| ||  |||| ||||||||||| ||||||||||| |||||    
T  9323098 ttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9323014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 9377677 - 9377493
Alignment:
Q  78 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 177  Q
    |||||| ||||||||||  | ||||| | ||||| ||| || |||||||||||||||||||||||||| ||||    |||||||||||||||||| || |    
T  9377677 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9377578  T
Q  178 ttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaag 262  Q
    ||| ||||||||| ||||| |  ||||||||  |||| | || ||| ||  |||| ||||||||||| ||||||||||| |||||    
T  9377577 ttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9377493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 9335169 - 9334986
Alignment:
Q  78 ttaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtgg 177  Q
    |||||| ||||||||||  | ||||| | ||||| ||| || ||||||||||||||| |||||||||| ||||    |||||||||||||||||| || |    
T  9335169 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9335071  T
Q  178 ttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaag 262  Q
    ||| ||||||||| ||||| |  ||||||||  |||| | || ||| ||  |||| ||||||||||| ||||||||||| |||||    
T  9335070 ttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9334986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 35133451 - 35133622
Alignment:
Q  107 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagtggttctgtttccttgttcattatagataatc 206  Q
    ||||||||| || |||||||||||||| |||||||||||||| | || |||||||| | ||||||| || ||| |||| | ||| || || |  || ||     
T  35133451 agcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatt 35133550  T
Q  207 tctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgatagca 278  Q
    ||  |||  | || |||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||||    
T  35133551 tcgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattccgatagca 35133622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 30776114 - 30776179
Alignment:
Q  107 agcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaagg 172  Q
    |||||| ||||  ||||||||| |||| | |||||||||| |||||| ||||||||||||||||||    
T  30776114 agcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaagg 30776179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 308
Target Start/End: Original strand, 12529834 - 12530066
Alignment:
Q  76 aattaccatagatagtgttagctgggtttgaagcagcttggtttttagcagcatcaccaatcaacctttgatcatcagagaaagcaacaaaagaaggagt 175  Q
    |||||||| |||||||||| |  ||||| || | |||||| ||||| ||||||| ||||||||| || |||  || ||  ||||||||| ||||||| ||    
T  12529834 aattaccaaagatagtgttggtggggttagaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgt 12529933  T
Q  176 ggttctgtttccttgttcattatagataatctctgctctgttgttttgttcctgccatacagcaacacatgaataggttgtgccaaggtcgattccgata 275  Q
     ||| |||||||||| ||||| |  || || ||  | |  |   |||| || ||||||||  |||||||||| || ||||||||||| || ||||| |||    
T  12529934 tgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctata 12530033  T
Q  276 gcaggtccctcatattttttggccattctcttt 308  Q
    |||  ||| ||||| ||||| ||||||||||||    
T  12530034 gcaactccttcatacttttttgccattctcttt 12530066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 151
Target Start/End: Original strand, 28911324 - 28911355
Alignment:
Q  120 ttagcagcatcaccaatcaacctttgatcatc 151  Q
    ||||||||||||||||||||||||||||||||    
T  28911324 ttagcagcatcaccaatcaacctttgatcatc 28911355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 11159754 - 11159795
Alignment:
Q  230 ccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||||||||||||||| ||||||||||| || |||||||||||    
T  11159754 ccatacagcaacacaagaataggttgttcctaggtcgattcc 11159795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 11198306 - 11198347
Alignment:
Q  230 ccatacagcaacacatgaataggttgtgccaaggtcgattcc 271  Q
    ||||||||||||||| ||||||||||| || |||||||||||    
T  11198306 ccatacagcaacacaagaataggttgttcctaggtcgattcc 11198347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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