View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1289_high_1 (Length: 723)

Name: NF1289_high_1
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1289_high_1
NF1289_high_1
[»] chr4 (3 HSPs)
chr4 (67-712)||(2244218-2244852)
chr4 (314-411)||(10430721-10430819)
chr4 (314-380)||(54780297-54780363)
[»] chr7 (4 HSPs)
chr7 (172-425)||(47261822-47262070)
chr7 (257-425)||(35406185-35406351)
chr7 (67-104)||(47261780-47261817)
chr7 (172-243)||(23071668-23071742)
[»] chr5 (5 HSPs)
chr5 (172-425)||(9718087-9718335)
chr5 (172-425)||(15928160-15928408)
chr5 (314-411)||(23284729-23284826)
chr5 (67-104)||(9718340-9718377)
chr5 (67-104)||(15928413-15928450)
[»] chr1 (5 HSPs)
chr1 (172-425)||(1803316-1803564)
chr1 (67-104)||(1803274-1803311)
chr1 (319-411)||(21741032-21741125)
chr1 (68-102)||(4976724-4976758)
chr1 (68-102)||(23182920-23182954)
[»] chr8 (1 HSPs)
chr8 (285-360)||(34546425-34546500)
[»] chr3 (1 HSPs)
chr3 (139-176)||(31215940-31215977)
[»] chr6 (1 HSPs)
chr6 (322-409)||(19740350-19740438)


Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 67 - 712
Target Start/End: Complemental strand, 2244852 - 2244218
Alignment:
Q  67 atcaagagcatcccaatttcttggatcaaatatatcaaacaaatgttcagatgggtttccatgctctacattgtcattaacattatcctccagattatca 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244852 atcaagagcatcccaatttcttggatcaaatatatcaaacaaatgttcagatgggtttccatgctctacattgtcattaacattatcctccagattatca 2244753  T
Q  167 tcttcattattcaaattaacatcatcaccattaacatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacat 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2244752 tcttcattattcaaattaacatcatcaccattaacatcacctctattttccaaatcaacactttcattctccatattactcttctcagttgtaaccacat 2244653  T
Q  267 tttcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244652 tttcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttg 2244553  T
Q  367 agattgaataaactcttcaagt-ttttctttttcttacgtttctcatatccggattcatattttctaatcttaggaggaatcttaggaggcatattgagg 465  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||            || ||||||||||||||||||     
T  2244552 agattgaataaactcttcaagttttttctttttcttacgtttctcatatccggattcatactttct------------aaacttaggaggcatattgaga 2244465  T
Q  466 aaagaattcagaacctgaaatttgtcactcaccactgagttgaaaaaacaaatcaactccgcagctttccctttaccgtcgagtgaatcagtgcaactcg 565  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2244464 aaagaattcagaacctgaaatttgtcactcactactgagttgaaaaaacaaatcaactccgtagctttccctttaccgtcgagtgaatcagtgcaactcg 2244365  T
Q  566 gcgttctccacagctaggaattgagcgtgaaggattgtgcagtcagtaaatgaaacctagcaattctcaaatgaaaataaaaattagtaatttagtaaca 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244364 gcgttctccacagctaggaattgagcgtgaaggattgtgcagtcagtaaatgaaacctagcaattctcaaatgaaaataaaaattagtaatttagtaaca 2244265  T
Q  666 taatgctacctagaatcaaaagattaagccaaaagaatcctctctct 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2244264 taatgctacctagaatcaaaagattaagccaaaagaatcctctctct 2244218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 411
Target Start/End: Original strand, 10430721 - 10430819
Alignment:
Q  314 tcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactcttcaa-gtttttctttttcttacgtttctca 411  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||| |||| |||| ||| |||||  |||  |||||||||||| |||| ||||||    
T  10430721 tcaataggaatttgtgtttcttttacaataaatttatcaagagctcctgtttgggattcaattaactcagcaatttttttctttttcctacgcttctca 10430819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 54780363 - 54780297
Alignment:
Q  314 tcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaact 380  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||| |||| |||| ||| ||||    
T  54780363 tcaaaaggaatttgtgtttcttttacaataaatttatcaagagctcctgtttgggattcaattaact 54780297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 172 - 425
Target Start/End: Original strand, 47261822 - 47262070
Alignment:
Q  172 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacattt 268  Q
    |||||||||||||||||||||| || |    |||||| |||||||||||  |||||||||||||||||| ||||    |||   |   ||||||||||||    
T  47261822 attattcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat----cttg--aacagtaaccacattt 47261915  T
Q  269 tcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaagagctcctcttt 365  Q
    ||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   ||||||||||| | ||| |||| |||||||||| |||    
T  47261916 tcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctccttttt 47262009  T
Q  366 gagattgaataaactcttcaagt-ttttctttttcttacgtttctcatatccggattcata 425  Q
    |||||||||| |||| ||||| | |||||||| ||||||| || ||| |||| ||||||||    
T  47262010 gagattgaattaacttttcaattcttttctttctcttacgcttttcacatccagattcata 47262070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 257 - 425
Target Start/End: Original strand, 35406185 - 35406351
Alignment:
Q  257 gtaaccacattttcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaa 353  Q
    ||||||||||||||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   ||||||||||| | ||| |||| ||    
T  35406185 gtaaccacattttcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaa 35406278  T
Q  354 gagctcctctttgagattgaataaactcttcaagt-ttttctttttcttacgtttctcatatccggattcata 425  Q
    |||||||| ||||||||||||| |||| ||||| | |||||||| ||||||| || ||| |||  ||||||||    
T  35406279 gagctcctttttgagattgaatgaacttttcaattcttttctttctcttacgcttttcacatcgagattcata 35406351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 47261780 - 47261817
Alignment:
Q  67 atcaagagcatcccaatttcttggatcaaatatatcaa 104  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47261780 atcaagagcatcccaatttcttggatcaaatatatcaa 47261817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 23071668 - 23071742
Alignment:
Q  172 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatatt 243  Q
    ||||||||||||||||||||||  | |    |||||||||||||||| |  ||||||||||||||||||||||||    
T  23071668 attattcaaattaacatcatcaataatgggcacatcacctctatttttctgatcaacactttcattctccatatt 23071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 172 - 425
Target Start/End: Complemental strand, 9718335 - 9718087
Alignment:
Q  172 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacattt 268  Q
    |||||||||||||||||||||| || |    |||||| |||||||||||  |||||||||||||||||| ||||    |||   |   ||||||||||||    
T  9718335 attattcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat----cttg--aacagtaaccacattt 9718242  T
Q  269 tcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaagagctcctcttt 365  Q
    ||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   ||||||||||| | ||| |||| |||||||||| |||    
T  9718241 tcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctccttttt 9718148  T
Q  366 gagattgaataaactcttcaagt-ttttctttttcttacgtttctcatatccggattcata 425  Q
    |||||||||| |||| ||||| | |||||||| ||||||| || ||| |||| ||||||||    
T  9718147 gagattgaattaacttttcaattcttttctttctcttacgcttttcacatccagattcata 9718087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 172 - 425
Target Start/End: Complemental strand, 15928408 - 15928160
Alignment:
Q  172 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacattt 268  Q
    |||||||||||||||||||||| || |    |||||| |||||||||||  |||||||||||||||||| ||||    |||   |   ||||||||||||    
T  15928408 attattcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat----cttg--aacagtaaccacattt 15928315  T
Q  269 tcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaagagctcctcttt 365  Q
    ||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   ||||||||||| | ||| |||| |||||||||| |||    
T  15928314 tcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggttcttttatcaaaaacttattaagagctccttttt 15928221  T
Q  366 gagattgaataaactcttcaagt-ttttctttttcttacgtttctcatatccggattcata 425  Q
    |||||||||| |||| ||||| | |||||||| ||||||| || ||| |||| ||||||||    
T  15928220 gagattgaattaacttttcaattcttttctttctcttacgcttttcacatccagattcata 15928160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 411
Target Start/End: Original strand, 23284729 - 23284826
Alignment:
Q  314 tcaacaggaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactcttcaagtttttctttttcttacgtttctca 411  Q
    |||| ||||||||||| |||||||| || |||||| |||||||||||| |||| |||| ||| |||||  ||| |||||||||||| |||| ||||||    
T  23284729 tcaataggaatttgtgtttcttttacaataaatttttcaagagctcctgtttgggattcaattaactcagcaattttttctttttcctacgcttctca 23284826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 9718377 - 9718340
Alignment:
Q  67 atcaagagcatcccaatttcttggatcaaatatatcaa 104  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9718377 atcaagagcatcccaatttcttggatcaaatatatcaa 9718340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 15928450 - 15928413
Alignment:
Q  67 atcaagagcatcccaatttcttggatcaaatatatcaa 104  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15928450 atcaagagcatcccaatttcttggatcaaatatatcaa 15928413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 425
Target Start/End: Original strand, 1803316 - 1803564
Alignment:
Q  172 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatattactcttctcagatgtaaccacattt 268  Q
    |||||||||||||||||||||| || |    |||||| |||||||||||  |||||||||||||||||| ||||  || |   ||||   ||||||||||    
T  1803316 attattcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat--ct-tgaacaga---aaccacattt 1803409  T
Q  269 tcaagaatttcaacatcaacattaacattaccgacattctgattttcaacaggaatttgt---ggttcttttataagaaatttatcaagagctcctcttt 365  Q
    ||||||| | |||||||||||||| ||      ||||| | |||||||| ||||||||||   || | |||||| | ||| |||| |||||||||| |||    
T  1803410 tcaagaactccaacatcaacattatca------acattttcattttcaataggaatttgttgcggatattttatcaaaaacttattaagagctccttttt 1803503  T
Q  366 gagattgaataaactcttcaagt-ttttctttttcttacgtttctcatatccggattcata 425  Q
    |||||||||| |||| ||||| | |||||||| ||||||| || ||| |||| ||||||||    
T  1803504 gagattgaattaacttttcaattcttttctttctcttacgcttttcacatccagattcata 1803564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 1803274 - 1803311
Alignment:
Q  67 atcaagagcatcccaatttcttggatcaaatatatcaa 104  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1803274 atcaagagcatcccaatttcttggatcaaatatatcaa 1803311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 411
Target Start/End: Original strand, 21741032 - 21741125
Alignment:
Q  319 aggaatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactcttcaa-gtttttctttttcttacgtttctca 411  Q
    ||||||||||  |||||||| || ||||||||||||||||||| |||| |||| ||| |||||  |||  |||||||||||| |||| ||||||    
T  21741032 aggaatttgtatttcttttaaaataaatttatcaagagctcctgtttgggattcaattaactcagcaatttttttctttttcctacgcttctca 21741125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 4976724 - 4976758
Alignment:
Q  68 tcaagagcatcccaatttcttggatcaaatatatc 102  Q
    ||||||| |||||||||||||||||||||||||||    
T  4976724 tcaagagaatcccaatttcttggatcaaatatatc 4976758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 23182954 - 23182920
Alignment:
Q  68 tcaagagcatcccaatttcttggatcaaatatatc 102  Q
    ||||||| |||||||||||||||||||||||||||    
T  23182954 tcaagagaatcccaatttcttggatcaaatatatc 23182920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 34546425 - 34546500
Alignment:
Q  285 caacattaacattaccgacattctgattttcaacaggaatttgtggttcttttataagaaatttatcaagagctcc 360  Q
    |||||||  ||||| | |||||||||||||| | |||||||||| ||| |||||||| ||||||||||||||||||    
T  34546425 caacattgtcattatcaacattctgattttcgaaaggaatttgttgtttttttataacaaatttatcaagagctcc 34546500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 31215977 - 31215940
Alignment:
Q  139 gtcattaacattatcctccagattatcatcttcattat 176  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31215977 gtcattaacattatcctctagattatcatcttcattat 31215940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 19740350 - 19740438
Alignment:
Q  322 aatttgtggttcttttataagaaatttatcaagagctcctctttgagattgaataaactcttcaa-gtttttctttttcttacgtttct 409  Q
    |||||||| |||||||| || ||||||||||||||||||| |||| |||| ||| |||||  |||  |||||||||||| |||| ||||    
T  19740350 aatttgtgtttcttttacaataaatttatcaagagctcctgtttgggattcaattaactcagcaatttttttctttttcctacgcttct 19740438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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