View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1289_high_10 (Length: 354)

Name: NF1289_high_10
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1289_high_10
NF1289_high_10
[»] chr1 (6 HSPs)
chr1 (23-286)||(50956678-50956942)
chr1 (185-284)||(50947168-50947267)
chr1 (65-158)||(50947317-50947409)
chr1 (185-258)||(50963653-50963726)
chr1 (184-286)||(15855025-15855127)
chr1 (66-148)||(15855230-15855310)
[»] chr5 (2 HSPs)
chr5 (184-284)||(33630447-33630547)
chr5 (102-151)||(33630603-33630652)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 286
Target Start/End: Complemental strand, 50956942 - 50956678
Alignment:
Q  23 atcatcaccaaaatatgttaacattcatcacttcaaggaaccaagttaggaaattgattccagctcaatataaattttaacatagcaaacagaatctcaa 122  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50956942 atcatcaccaaaatatgttaacattaatcacttcaacgaaccaagttaggaaattgattccagctcaatataaattttaacatagcaaaccgaatctcaa 50956843  T
Q  123 attttgactccaaaatacttaaactaacaccatgattacatgt-nnnnnnnnnnnnnnnnnntaactaaccaagactagggcaaacaaagtgtggcgatc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||    
T  50956842 attttgactccaaaatacttaaactaacaccatgattacatgtaaaaaaaaaaaagcaaaaataactaaccaagactagggcaaacaaagtgtggcgatc 50956743  T
Q  222 aacttcgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcatgct 286  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50956742 aactttgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcatgct 50956678  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 50947267 - 50947168
Alignment:
Q  185 aactaaccaagactagggcaaacaaagtgtggcgatcaacttcgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcatg 284  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| ||||||    
T  50947267 aactaaccaagactagcgcaaacagtgtgtggcgatcaacttcgatgaactcaaggtcccaactacggagacttttttcattatctccggcatatgcatg 50947168  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 50947409 - 50947317
Alignment:
Q  65 aagttaggaaattgattccagctcaatataaattttaacatagcaaacagaatctcaaattttgactccaaaatacttaaactaacaccatgat 158  Q
    |||||||||||||||||  | ||||| |||||||| | ||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||    
T  50947409 aagttaggaaattgattatatctcaacataaatttca-catagcaaacagaatctcaaattttaactccaaattaattaaactaacatcatgat 50947317  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 50963726 - 50963653
Alignment:
Q  185 aactaaccaagactagggcaaacaaagtgtggcgatcaacttcgatgaattcaaggtcccaattacggagactt 258  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||   ||||||||||    
T  50963726 aactaaccaagactagggcaaacaatgtgtggcgatcaactttgatgaactcaaggtcccaggaacggagactt 50963653  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 15855127 - 15855025
Alignment:
Q  184 taactaaccaagactagggcaaacaaagtgtggcgatcaacttcgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcat 283  Q
    ||||||||||||||||  |||||||| ||  || ||||||||| |||||| ||  | |||||| |||||||||||||||||||||||| ||||||| |||    
T  15855127 taactaaccaagactatagcaaacaatgtacggtgatcaactttgatgaactcttgatcccaaatacggagacttttttcattatctctagcatcttcat 15855028  T
Q  284 gct 286  Q
    |||    
T  15855027 gct 15855025  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 15855310 - 15855230
Alignment:
Q  66 agttaggaaattgattccagctcaatataaattttaacatagcaaacagaatctcaaattttgactccaaaatacttaaacta 148  Q
    |||||| | |||||||| | |||| ||||||||| | ||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  15855310 agttagtatattgattctatctcagtataaatttca-cattgcaaacagaatct-aaattttaactccaaaatacttaaacta 15855230  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 33630547 - 33630447
Alignment:
Q  184 taactaaccaagactagggcaaacaaagtgtggcgatcaacttcgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcat 283  Q
    ||||| || ||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33630547 taacttactaagactagggcaaacaatgcgtggcgatcaacttctatgaactcaaggtcccaattacggagacttttttcattatctccagcttctgcat 33630448  T
Q  284 g 284  Q
    |    
T  33630447 g 33630447  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 33630652 - 33630603
Alignment:
Q  102 acatagcaaacagaatctcaaattttgactccaaaatacttaaactaaca 151  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  33630652 acatagcaaacagaatctcaaattttaactccaaaataatcaaactaaca 33630603  T

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