View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1289_high_4 (Length: 569)

Name: NF1289_high_4
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1289_high_4
NF1289_high_4
[»] chr1 (8 HSPs)
chr1 (1-555)||(2568551-2569101)
chr1 (491-553)||(29119433-29119495)
chr1 (491-564)||(8809738-8809811)
chr1 (491-564)||(32676136-32676209)
chr1 (491-553)||(25161309-25161371)
chr1 (491-544)||(46435571-46435624)
chr1 (492-525)||(16679835-16679868)
chr1 (491-555)||(8462129-8462192)
[»] chr8 (9 HSPs)
chr8 (491-564)||(41179661-41179734)
chr8 (498-555)||(18168392-18168449)
chr8 (498-555)||(18631949-18632006)
chr8 (491-530)||(1514803-1514842)
chr8 (491-530)||(11254159-11254198)
chr8 (410-445)||(12954835-12954870)
chr8 (409-448)||(24733277-24733316)
chr8 (499-564)||(4708405-4708470)
chr8 (491-564)||(24337928-24338001)
[»] chr7 (5 HSPs)
chr7 (491-564)||(48250154-48250227)
chr7 (491-564)||(35341536-35341609)
chr7 (490-564)||(31306971-31307046)
chr7 (409-442)||(35923474-35923507)
chr7 (491-556)||(40856392-40856457)
[»] chr4 (15 HSPs)
chr4 (491-564)||(12473704-12473777)
chr4 (491-564)||(12528113-12528186)
chr4 (491-564)||(21260794-21260867)
chr4 (491-564)||(35869669-35869742)
chr4 (491-564)||(55590482-55590555)
chr4 (492-564)||(34829181-34829253)
chr4 (492-555)||(52910156-52910219)
chr4 (491-564)||(51811914-51811987)
chr4 (491-564)||(52012778-52012851)
chr4 (492-564)||(33249472-33249544)
chr4 (491-546)||(22343337-22343392)
chr4 (495-550)||(49998486-49998541)
chr4 (415-450)||(40252766-40252801)
chr4 (409-442)||(32692920-32692953)
chr4 (412-444)||(24369515-24369547)
[»] chr3 (16 HSPs)
chr3 (493-554)||(32319473-32319534)
chr3 (492-564)||(50934501-50934573)
chr3 (491-564)||(47186175-47186248)
chr3 (491-555)||(10179870-10179934)
chr3 (491-553)||(47426350-47426412)
chr3 (491-555)||(10018673-10018737)
chr3 (495-555)||(33509684-33509744)
chr3 (493-553)||(39498778-39498838)
chr3 (491-553)||(44380254-44380316)
chr3 (491-564)||(31187168-31187241)
chr3 (491-555)||(10123213-10123277)
chr3 (491-555)||(42664673-42664737)
chr3 (504-555)||(37742738-37742789)
chr3 (409-439)||(48180273-48180303)
chr3 (409-442)||(30082964-30082997)
chr3 (409-454)||(48322163-48322207)
[»] scaffold0032 (1 HSPs)
scaffold0032 (491-555)||(34194-34258)
[»] chr5 (13 HSPs)
chr5 (491-555)||(19357368-19357432)
chr5 (491-564)||(38010712-38010785)
chr5 (491-555)||(11607641-11607705)
chr5 (496-564)||(33858636-33858704)
chr5 (491-564)||(13015381-13015454)
chr5 (491-555)||(1826259-1826323)
chr5 (491-555)||(9827788-9827852)
chr5 (491-555)||(13086753-13086817)
chr5 (491-564)||(29989962-29990035)
chr5 (491-564)||(39570141-39570214)
chr5 (491-555)||(13478152-13478216)
chr5 (408-447)||(24231710-24231749)
chr5 (507-546)||(33271630-33271669)
[»] chr2 (9 HSPs)
chr2 (491-555)||(34392188-34392252)
chr2 (494-564)||(7381695-7381765)
chr2 (491-564)||(21603959-21604032)
chr2 (491-553)||(37358030-37358092)
chr2 (491-539)||(4775634-4775682)
chr2 (492-539)||(34904304-34904351)
chr2 (409-455)||(35022712-35022757)
chr2 (409-442)||(13811144-13811177)
chr2 (415-444)||(42924384-42924413)
[»] chr6 (7 HSPs)
chr6 (491-555)||(11753167-11753231)
chr6 (492-552)||(1211954-1212014)
chr6 (491-564)||(5403974-5404047)
chr6 (409-442)||(7465582-7465615)
chr6 (409-439)||(2424394-2424424)
chr6 (492-530)||(11113557-11113595)
chr6 (491-564)||(34245567-34245640)
[»] scaffold0229 (1 HSPs)
scaffold0229 (492-552)||(13116-13176)
[»] scaffold1444 (1 HSPs)
scaffold1444 (409-445)||(881-917)
[»] scaffold0519 (1 HSPs)
scaffold0519 (491-530)||(11195-11234)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 2568551 - 2569101
Alignment:
Q  1 aaaccttcaccgtgagagtttggggtgagatgatgatgt-----ccatctcatcgcccactttgctctttcctggtaatatgctcaccatgtcgattaag 95  Q
    |||||||||||||||||||||||||||||||||| ||||     |||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  2568551 aaaccttcaccgtgagagtttggggtgagatgattatgtatataccatctcatcacccactttgctctttcgtggaaatatgctcaccatgtcgattaag 2568650  T
Q  96 aatcggtaaaatacacggtaagtgacaaacagattaaggaaatatatgaattcctctatcattgaatcagagagttagttcttgtgttctataactaatt 195  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  2568651 aatcggtaaaatatgcggtaagtgacaaacagattaaggaaatatatgaatttctctatcattgaatcacagagttaattcttgtgttctataactaatt 2568750  T
Q  196 aagaaagttatataaactatcattatagtttttgatacgtataagagttttaatcctaatcctaacatataacctaatgaaatcaaagttgaatgtacga 295  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||      |||||||||||||||||||||||||||||||||||||| |    
T  2568751 aagaaagttataaaaactatcgttatagtttttgatatgtataagagttttaat------cctaacatataacctaatgaaatcaaagttgaatgtacaa 2568844  T
Q  296 tctcgaatgataaattttacagacatttatctgttgttgtgaccggaaagcctatcgacttgggaagggaggcaaccacagatcttggagtagtttttgc 395  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2568845 tctcgaaagataaattttacagacatttatctgttgttgtgaccggaatgcctatcgacatgggaagggaggcaaccacagatcttggagtagtttttgc 2568944  T
Q  396 aacataagcgtggttaaagagtgtcccggagacactcgttaacattttccttattttaataacatttttgagcatgttgtagatgattattaagcccact 495  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||| ||||||||    
T  2568945 aacataagtgtggttaaagagtgtcccggaggcactcgttaacatttcccttattttaataacatttttgagcatgttgta---gattattgagcccact 2569041  T
Q  496 tgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  2569042 tgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctacc 2569101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 491 - 553
Target Start/End: Complemental strand, 29119495 - 29119433
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccaccta 553  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||    
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 29119433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 8809811 - 8809738
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||| ||| ||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttact 8809738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 32676136 - 32676209
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| | ||  ||||||||| ||| ||||    
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttact 32676209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 25161309 - 25161371
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccaccta 553  Q
    |||||||||||||||||| ||  ||||| |||||| ||||  |||||||||||||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccaccta 25161371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 544
Target Start/End: Complemental strand, 46435624 - 46435571
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtg 544  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||||||| ||||    
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 525
Target Start/End: Complemental strand, 16679868 - 16679835
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatata 525  Q
    ||||||||||||||||||||||||||| ||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatata 16679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 8462129 - 8462192
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||  ||||| ||||||||| |||||||||||   |||||| |||||||||||||||    
T  8462129 ccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctacc 8462192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 41179734 - 41179661
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||| ||||    
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttact 41179661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 498 - 555
Target Start/End: Original strand, 18168392 - 18168449
Alignment:
Q  498 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18168449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 498 - 555
Target Start/End: Original strand, 18631949 - 18632006
Alignment:
Q  498 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18632006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 530
Target Start/End: Original strand, 1514803 - 1514842
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatt 530  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacatt 1514842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 530
Target Start/End: Complemental strand, 11254198 - 11254159
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatt 530  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcatt 11254159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 445
Target Start/End: Original strand, 12954835 - 12954870
Alignment:
Q  410 taaagagtgtcccggagacactcgttaacattttcc 445  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12954835 taaagagtgtctcggagacactcgttaacattttcc 12954870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 24733277 - 24733316
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattttcctta 448  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  24733277 ttaaagagtgccccggagacactcgttaacatttccctta 24733316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 564
Target Start/End: Complemental strand, 4708470 - 4708405
Alignment:
Q  499 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||| |||||||||||||  |||||||||  |||||||| |||||| |||||||| ||| ||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttact 4708405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 24338001 - 24337928
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||| ||||||||| ||||| |||||| |||  | |||||| ||||||||| ||||| ||| ||||    
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttact 24337928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 48250154 - 48250227
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||| ||||    
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttact 48250227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 35341536 - 35341609
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||| ||| ||||    
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttact 35341609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 31307046 - 31306971
Alignment:
Q  490 cccacttgtgtaccattaaggtaccaatgatatatatcatttgccaa-ttacagtgtgccacctacctatgctact 564  Q
    |||| |||||||||||||| ||| |||||||||||||||||  |||| ||| ||||||| ||||||| ||| ||||    
T  31307046 cccatttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttact 31306971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 35923507 - 35923474
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattt 442  Q
    ||||||||||| ||||||||||||||||||||||    
T  35923507 ttaaagagtgttccggagacactcgttaacattt 35923474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 40856392 - 40856457
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacct 556  Q
    |||||| |||| ||||||||||| |||||||||||| |||   |||||| |||||| |||||||||    
T  40856392 ccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacct 40856457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 12473704 - 12473777
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||| ||| ||||    
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttact 12473777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 12528113 - 12528186
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||| ||| ||||    
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttact 12528186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 21260794 - 21260867
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||| ||||    
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttact 21260867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 35869742 - 35869669
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| | ||||||||||||| ||| ||||    
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttact 35869669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 55590482 - 55590555
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||| |||||| |||||||| ||| ||||    
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttact 55590555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 492 - 564
Target Start/End: Complemental strand, 34829253 - 34829181
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||| ||||| ||||||||||||||||||||||||| | |||||||| |||||| |||||||| ||| ||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttact 34829181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 555
Target Start/End: Complemental strand, 52910219 - 52910156
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||| | |||||||||| |||||| |||| |||||||| |||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctacc 52910156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 51811914 - 51811987
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||| |||||||||||||||| ||| ||||||||| ||| |||||||| ||| ||||||||||| ||| ||||    
T  51811914 ccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttact 51811987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 52012778 - 52012851
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||| ||| ||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttact 52012851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 564
Target Start/End: Complemental strand, 33249544 - 33249472
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||| |||| ||||||  ||| |||||||| |||||| |||||||| ||| ||||    
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttact 33249472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 546
Target Start/End: Original strand, 22343337 - 22343392
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtg 546  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||| ||||||    
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtg 22343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 495 - 550
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  495 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccac 550  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||  |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 450
Target Start/End: Original strand, 40252766 - 40252801
Alignment:
Q  415 agtgtcccggagacactcgttaacattttccttatt 450  Q
    |||| |||||||||||||||||||||||||||||||    
T  40252766 agtgccccggagacactcgttaacattttccttatt 40252801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 32692953 - 32692920
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattt 442  Q
    |||||||||||||||||| |||||||||||||||    
T  32692953 ttaaagagtgtcccggaggcactcgttaacattt 32692920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 24369515 - 24369547
Alignment:
Q  412 aagagtgtcccggagacactcgttaacattttc 444  Q
    |||| ||||||||||||||||||||||||||||    
T  24369515 aagattgtcccggagacactcgttaacattttc 24369547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 32319534 - 32319473
Alignment:
Q  493 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctac 554  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 492 - 564
Target Start/End: Original strand, 50934501 - 50934573
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||| |||| ||| ||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttact 50934573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 47186175 - 47186248
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||| ||| ||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttact 47186248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 10179934 - 10179870
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||||||||||||    
T  10179934 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctacc 10179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 47426350 - 47426412
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccaccta 553  Q
    |||||||||||||||||||||||||||  |||||| |||| |||||||| |||||| ||||||    
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcaccta 47426412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 10018737 - 10018673
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||| | |||||||||||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctacc 10018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 495 - 555
Target Start/End: Original strand, 33509684 - 33509744
Alignment:
Q  495 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    ||||||||||||||||||| |||  |||||||||||  ||||||| |||||||||||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctacc 33509744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 493 - 553
Target Start/End: Complemental strand, 39498838 - 39498778
Alignment:
Q  493 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccaccta 553  Q
    |||||||||||||||| ||||||||||||||||| ||| | |||||| |||||| ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcaccta 39498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 44380254 - 44380316
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccaccta 553  Q
    |||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| ||||||    
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcaccta 44380316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 31187241 - 31187168
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||| ||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||| ||| ||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttact 31187168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 10123277 - 10123213
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||| ||| ||||| ||||||||| | | |||| | |||||||||||||||    
T  10123277 ccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctacc 10123213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 42664673 - 42664737
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||||||||||| | |||||| ||||  ||||| | |||||||||| ||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacatacc 42664737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 37742738 - 37742789
Alignment:
Q  504 attaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    ||||||||||||||| ||||||||||| | |||||| ||| |||||||||||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctacc 37742789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 439
Target Start/End: Original strand, 48180273 - 48180303
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaaca 439  Q
    |||||||||||||||||||||||||||||||    
T  48180273 ttaaagagtgtcccggagacactcgttaaca 48180303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 30082964 - 30082997
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattt 442  Q
    ||||||||||||||| ||||||||||||||||||    
T  30082964 ttaaagagtgtcccgaagacactcgttaacattt 30082997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 48322207 - 48322163
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattttccttattttaa 454  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  48322207 ttaaagagtgccccggag-cactcgttaacattttccttagtttaa 48322163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 34194 - 34258
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||    
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttacc 34258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 19357432 - 19357368
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    ||||||||||||||||| |||||||||| |||||| |||| |||||||| |||||||||||||||    
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctacc 19357368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 38010785 - 38010712
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||| ||| ||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttact 38010712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 11607705 - 11607641
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||    
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctacc 11607641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 33858704 - 33858636
Alignment:
Q  496 tgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||||||||||||||||||||  |||||||||||  ||||||| ||||||||||||||| ||| ||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttact 33858636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 13015381 - 13015454
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||| ||| ||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttact 13015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 1826259 - 1826323
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||| ||||||||    
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctacc 1826323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 9827788 - 9827852
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||||||||||||| |||||| | || | |||||| ||||| |||||||||    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctacc 9827852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 13086753 - 13086817
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| ||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 13086817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 29989962 - 29990035
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||| ||||| |||||| ||||  ||||| | |||||||||| |||| ||| ||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttact 29990035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 39570214 - 39570141
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||||||||| |||||| ||| ||||| |||||| |||| |||||||| |||||| |||||||| ||| ||||    
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttact 39570141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 13478216 - 13478152
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||||| ||||||| |||||| ||||  ||||| | |||||||||| ||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacatacc 13478152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 24231749 - 24231710
Alignment:
Q  408 gttaaagagtgtcccggagacactcgttaacattttcctt 447  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  24231749 gttaaagagtgttccggaggcactcgttaacattttcctt 24231710  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 546
Target Start/End: Original strand, 33271630 - 33271669
Alignment:
Q  507 aaggtaccaatgatatatatcatttgccaattacagtgtg 546  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtg 33271669  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 34392252 - 34392188
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||    
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctacc 34392188  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 564
Target Start/End: Original strand, 7381695 - 7381765
Alignment:
Q  494 cttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||||||||||||||||||||||| ||||||  ||| |||||||| ||||||||| ||||| ||| ||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttact 7381765  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 21603959 - 21604032
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| |||||  |||||||| ||| ||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttact 21604032  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 553
Target Start/End: Complemental strand, 37358092 - 37358030
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccaccta 553  Q
    ||||||||||| ||||||||||||||||||||||| ||||  | ||||| |||||| ||||||    
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcaccta 37358030  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 539
Target Start/End: Original strand, 4775634 - 4775682
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaatta 539  Q
    |||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  4775634 ccacttatgtaccattaagctaccaatgatatatattattggccaatta 4775682  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 539
Target Start/End: Complemental strand, 34904351 - 34904304
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaatta 539  Q
    ||||| |||| |||||||||||||||| |||||||||||||| |||||    
T  34904351 cacttttgtatcattaaggtaccaatgttatatatcatttgctaatta 34904304  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 35022712 - 35022757
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattttccttattttaat 455  Q
    |||||||||| || || ||||||||||||||||||||||||||||||    
T  35022712 ttaaagagtgccctgg-gacactcgttaacattttccttattttaat 35022757  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 13811144 - 13811177
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattt 442  Q
    ||||||||||||||||||||||| ||||||||||    
T  13811144 ttaaagagtgtcccggagacactggttaacattt 13811177  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 444
Target Start/End: Complemental strand, 42924413 - 42924384
Alignment:
Q  415 agtgtcccggagacactcgttaacattttc 444  Q
    ||||||||||||||||||||||||||||||    
T  42924413 agtgtcccggagacactcgttaacattttc 42924384  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 11753167 - 11753231
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 555  Q
    |||||||||||||||||||||||||||| |||||| |||  |||||||| ||||| |||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacc 11753231  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 552
Target Start/End: Complemental strand, 1212014 - 1211954
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacct 552  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||    
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 1211954  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 5404047 - 5403974
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||||||||||||||||||||| |||| ||||||| ||| | || ||| ||| ||||||||||| ||| ||||    
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttact 5403974  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 7465582 - 7465615
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattt 442  Q
    ||||||||||||||||||||||||||||||||||    
T  7465582 ttaaagagtgtcccggagacactcgttaacattt 7465615  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 439
Target Start/End: Original strand, 2424394 - 2424424
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaaca 439  Q
    |||||||||||||||||||||||||||||||    
T  2424394 ttaaagagtgtcccggagacactcgttaaca 2424424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 530
Target Start/End: Original strand, 11113557 - 11113595
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatatatcatt 530  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacatt 11113595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 34245567 - 34245640
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacctatgctact 564  Q
    ||||||||||||||||||||||  |||| |||||| ||||  ||||| | |||||||||| |||| ||| ||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttact 34245640  T

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Target: scaffold0229 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 552
Target Start/End: Complemental strand, 13176 - 13116
Alignment:
Q  492 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacct 552  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||    
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 13116  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 917 - 881
Alignment:
Q  409 ttaaagagtgtcccggagacactcgttaacattttcc 445  Q
    |||||||||| ||||||||||||||||||||||||||    
T  917 ttaaagagtgccccggagacactcgttaacattttcc 881  T

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Target: scaffold0519 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 530
Target Start/End: Original strand, 11195 - 11234
Alignment:
Q  491 ccacttgtgtaccattaaggtaccaatgatatatatcatt 530  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcatt 11234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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