View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289_high_6 (Length: 396)
Name: NF1289_high_6
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 27066042 - 27065668
Alignment:
| Q |
1 |
ttataataaaactactgcttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttg |
100 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27066042 |
ttataataaaactactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttg |
27065943 |
T |
|
| Q |
101 |
aaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27065942 |
aaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatctt |
27065843 |
T |
|
| Q |
201 |
ctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccgag |
300 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065842 |
ctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgatggtggatgcgttgagtgagtgcgagagggcgccgag |
27065743 |
T |
|
| Q |
301 |
tgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacag |
375 |
Q |
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| T |
27065742 |
tgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacag |
27065668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 27079742 - 27079391
Alignment:
| Q |
18 |
cttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttat |
117 |
Q |
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| T |
27079742 |
cttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttat |
27079643 |
T |
|
| Q |
118 |
gcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatg |
217 |
Q |
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||||||||| ||||| | ||||||||||||||||||||||||||| || ||| |||||||||||||||| || |||||||| ||||||||||||||| || |
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| T |
27079642 |
gcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttg |
27079543 |
T |
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| Q |
218 |
aagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagc |
317 |
Q |
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||||| |||||||||||||| |||||||| |||||| | || ||||| ||||| | ||| ||||||| |||||||| |||||| | ||||| || |||| |
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| T |
27079542 |
aagcaagtttttaaggtgtctgagaattcctcgatggataagatgatagtggactcattgggtgagtgtgagagggcaccgagtatgggtgagacaaagc |
27079443 |
T |
|
| Q |
318 |
gttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttggg |
369 |
Q |
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| T |
27079442 |
gttgtgttggttcacttgaggatatgattgactttgcaacttcagttttggg |
27079391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 63 - 370
Target Start/End: Complemental strand, 27053538 - 27053231
Alignment:
| Q |
63 |
tggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
162 |
Q |
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||||| |||| |||||||||||||| || | ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||| |
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| T |
27053538 |
tggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgttttt |
27053439 |
T |
|
| Q |
163 |
gcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatg |
262 |
Q |
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||| ||||||||||||| ||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||||| || ||||| | ||| | || ||| |
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| T |
27053438 |
gccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattcctttatggaaaagatg |
27053339 |
T |
|
| Q |
263 |
atggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctg |
362 |
Q |
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|| ||||| | ||||||||||| || || ||||| ||| |||||| | ||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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| T |
27053338 |
atagtggactcattgagtgagtgtgaaagagcgccaagtaaaggtgagatcaagcgttgtgtaggttcgcttgaggacatgattgactttgcaacttcta |
27053239 |
T |
|
| Q |
363 |
ttttgggt |
370 |
Q |
| |
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|||||||| |
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| T |
27053238 |
ttttgggt |
27053231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 14866036 - 14866157
Alignment:
| Q |
41 |
agtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggata |
140 |
Q |
| |
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||||||||||||| |||||| |||| | |||||||||||||| | |||||||||||||| ||||| || || ||||||||||| ||||| || |||| |
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| T |
14866036 |
agtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagata |
14866135 |
T |
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| Q |
141 |
aattaccgccaaggtcgttttt |
162 |
Q |
| |
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||||||| |||||||||||| |
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| T |
14866136 |
aattacctaaaaggtcgttttt |
14866157 |
T |
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