View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289_high_9 (Length: 367)
Name: NF1289_high_9
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 359
Target Start/End: Complemental strand, 49932465 - 49932134
Alignment:
| Q |
30 |
tcaccaatctatatagttctttctcaaccatcaatctttgtagattgattcctttcgtccgttcttttgatctagccatagtgactctctatccgttgtg |
129 |
Q |
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| T |
49932465 |
tcaccaatctatatagttctttctcaaccatcagtctttgtagactgattcctttcgtgcgtttttttgatctagccatagtgactctctatccgttgtg |
49932366 |
T |
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| Q |
130 |
ggagtgagtgtttaggcggggcctaagaatgaatgatttatgcgctcctgcgtacgtgtcaatcaaggccnnnnnnnnnnnngcatatgatgccatgcct |
229 |
Q |
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| T |
49932365 |
ggagtgagtgtttaggcggggcctaagaatgaatgatttatgcgctcctgcgtacgtgtcaatcaaggccttttttctttttgcctatgatgccatgcct |
49932266 |
T |
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| Q |
230 |
gctgttacttcactcggtcgatggggataaaccactgtatcttgc--nnnnnnnnnatgctacttagacttgaatcaaccaaccggatctgtttgatctc |
327 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49932265 |
gctgttacttcactcggtcaatggggataaaccactgtatcttgctttttttttttatgctacttagacttgaatcaaccaaccggatctgtttgatctc |
49932166 |
T |
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| Q |
328 |
ttgcggcgagtgctgcttctttgacctatgct |
359 |
Q |
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||||| ||||||||||||||||||||| |||| |
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| T |
49932165 |
ttgcgacgagtgctgcttctttgacctgtgct |
49932134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 48782085 - 48782026
Alignment:
| Q |
284 |
atgctacttagacttgaatcaaccaaccggatctgtttgatctcttgcggcgagtgctgct |
344 |
Q |
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| T |
48782085 |
atgctacttagacttgaatcaaccaaccgcattagttcgatct-ttgcggcgagtgctgct |
48782026 |
T |
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