View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289_low_1 (Length: 918)
Name: NF1289_low_1
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_low_1 |
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| [»] scaffold0597 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 104 - 811
Target Start/End: Original strand, 39793512 - 39794225
Alignment:
| Q |
104 |
agatacctcctttatagtggtaattttcgcaatattttgtttgtaatcttaatgatgctttggnnnnnnngtaaagcacgtagcatttttggtgctgcgg |
203 |
Q |
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| T |
39793512 |
agatacctcctttatagtggtaattttctcaatattttgtttgtaatcttaacgatgctttggtttttttgtaaagcacgtagcatttttggtgctgcgg |
39793611 |
T |
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| Q |
204 |
ccatccaagattgagtgtgatcttgtatttttgagcatgctgtcataggatttaagtttgtttgcagtttaaactttttactatatggaaatatataact |
303 |
Q |
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| T |
39793612 |
ccatccaagattgagtgtgatcttgtatttttgagcatgctgtcataggatttaagtttgtttgcagttgaaactttttactatatggaaatatataact |
39793711 |
T |
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| Q |
304 |
ccatgatcaaagtttactctttggctatatatttatatttgcttcttttaaatattggtaatgcatatactgcttg------ttaattattgagcttctt |
397 |
Q |
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| T |
39793712 |
ccatgatcaaagtttactctttggctatttatttatatttgcttcttttaaatattggtaatgcatatactgcttgaggttgttaattattgagcttctt |
39793811 |
T |
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| Q |
398 |
atttgcaggtatctaaggaaggaacttcaccatttacatatatcattgttgacaaccaaacgtaatgttcattggcttagtcttccatttatttgttagt |
497 |
Q |
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| T |
39793812 |
atttgcaggtatctaaggaaggaacttcaccatttacatatatcattgttgacaaccaaacgtaatgttcattggcttagtcttccatttatttgttagt |
39793911 |
T |
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| Q |
498 |
agcatccttagcagaaataaatgataatacaaagcaataagcatgatggttcttattttcatttgtaatatgaaaatcacttcacatgaagcttctgctc |
597 |
Q |
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| T |
39793912 |
agcatccttagcagaaataaatgataatacaaagcaataagcatgatggttcttattttcgtttgtaatatgaaaatcacttcacatgaagcttctgctc |
39794011 |
T |
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| Q |
598 |
tagtttatttagatacttgacaatacctgaaaccgttattttaagtagcagaaagtgcacgtgtgagaaagaataaatgtgtattcttagtaggattaaa |
697 |
Q |
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| T |
39794012 |
tagtttgtttagataattgacaatacctgaaaccgttattttaagtagcagaaagtgcacgtgtgagaaagaataaatgtgtattcttagtaggattaaa |
39794111 |
T |
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| Q |
698 |
aagtatgttctatcatgannnnnnnnataattagatcttcaaggatttcatgctaatgcggctattgaaaatttgatttgtaactggactaatttttagt |
797 |
Q |
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| T |
39794112 |
aagtatgttctatcatgatttgttttataataagatcttcaaggatttcatgctaatgcggctattgaaaatttgatttgtaactagactaatttttagt |
39794211 |
T |
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| Q |
798 |
gtaatatttcagca |
811 |
Q |
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| T |
39794212 |
gtaatatttcagca |
39794225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0597 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 803 - 918
Target Start/End: Original strand, 4390 - 4505
Alignment:
| Q |
803 |
atttcagcagatgttgttaaccattttacccatatgtttacaaatagttctaatataattcaagatggatggatagaagaagttgttccaaacttgatta |
902 |
Q |
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||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
4390 |
atttcagcacatgttgttatccattttacaaatatgtttacaaatagttctaatattattcaaaatggattgatagaagaagttgttccaaactagatta |
4489 |
T |
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| Q |
903 |
caaatagagtcaataa |
918 |
Q |
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| T |
4490 |
caaatagagtcaataa |
4505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 29928946 - 29928908
Alignment:
| Q |
396 |
ttatttgcaggtatctaaggaaggaacttcaccatttac |
434 |
Q |
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| T |
29928946 |
ttatttgcaggtatctaaagagggaacttcaccatttac |
29928908 |
T |
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