View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289_low_13 (Length: 386)
Name: NF1289_low_13
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 30 - 382
Target Start/End: Original strand, 5565887 - 5566239
Alignment:
| Q |
30 |
agggattcattagtgccttgataaaattagagaagacgaccaaattgatgtcctgagagaatttcagtagaaaaatcttacataatatgttgagatttta |
129 |
Q |
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| T |
5565887 |
agggattaattagtgccttgataaaattagagaagacgaccaaattgatgtcttgagagaattttagtagaaaaatcttacataatatgttgagatttta |
5565986 |
T |
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| Q |
130 |
tacctatcttcggttagcctgttaaagaaatggccaacgatcgatgggcaagttggccctgtcggagcaattaaataactgtttctttaattttattttt |
229 |
Q |
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| T |
5565987 |
tacctatcttcggttagcctgttaaagaaatggccaacagtcgacgggcaagttggccctgtcggagcaattaaataactgcttctttaattttattttt |
5566086 |
T |
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| Q |
230 |
tcaactgacacaannnnnnnnattggtaatttaattagtttggtatttgaatataaagttcatttttcacttcgttgttccatttcgttgtctattcttc |
329 |
Q |
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| T |
5566087 |
tcaactgacacaattttttttattggtaatttaattagtttggtatttgaatataaagttcatttttcacttcgttgttccatttcgttgtctattcttc |
5566186 |
T |
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| Q |
330 |
ctcctaagaaaggtcatgcttctcacacttccacttattcactctagttcata |
382 |
Q |
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| T |
5566187 |
ctcctaagaaaggtcatgcttctcacacttccacttattcactctagttcata |
5566239 |
T |
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