View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289_low_19 (Length: 317)
Name: NF1289_low_19
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 42802883 - 42802632
Alignment:
| Q |
13 |
taggtaaaaagcaaacccttgcgttgcttaacttacatgagtatactagaatcacggtgactcattttaattgattttgcagaagttataagtgtatttt |
112 |
Q |
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| T |
42802883 |
taggtaaaaagcgaacccttgcgttgcttaacttacatgggtatactagaatcacggtgactcattttaattgattttgcagaagttataagtgtatttt |
42802784 |
T |
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| Q |
113 |
ttgaaaaatcacgatggatcaccatgattgcgacacgccatagtgataccaaacctacactcaagagaatctcttaaaaggagggtaaaatatagaattt |
212 |
Q |
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| T |
42802783 |
tcgaaaaatcacgatggatcaccataattgtgacacgccatagtgataccaaacctacactcaagagaatctcttaaaaggaggggaaaatatagaattt |
42802684 |
T |
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| Q |
213 |
tcattttgattcttagatcacattgttgaaactgaaaagatacatattcttc |
264 |
Q |
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| T |
42802683 |
tcattttgattcttagattacattgttgaaactgaaaagatacatattcttc |
42802632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 25514639 - 25514880
Alignment:
| Q |
13 |
taggtaaaaagcaaacccttgcgttgcttaacttacatgagtatactagaatcacggtgactcattttaattgattttgcagaagttataagtgtatttt |
112 |
Q |
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| T |
25514639 |
taggtaaaaagctaacccttgcgttgcttaacttacatgggtatgctagaatcacggtgactcattttaattgattttgcagaagttataagtgtatttt |
25514738 |
T |
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| Q |
113 |
ttgaaaaatcacgatggatcaccatgattgcgacacgccatagtgataccaa----acctacactcaagagaatctcttaaaaggagggtaaaatataga |
208 |
Q |
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| T |
25514739 |
ttgaaaaatcacgatggatcaccatgattgtgacacaccacagtgataccatgcatacatacacttaagagaatctcttaaaaggaggggaaaatataga |
25514838 |
T |
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| Q |
209 |
attttcattttgattcttagatcacattgttgaaactgaaaa |
250 |
Q |
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| T |
25514839 |
attttcattttgattcttagattacattcttgaaactgaaaa |
25514880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 25520736 - 25520494
Alignment:
| Q |
13 |
taggtaaaaagcaaacccttgcgttgcttaacttacatgagtatactagaatcacggtgactcattttaattgattttgcagaagttataagtgtatt-t |
111 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25520736 |
taggtaaaaagcgaacccttgcgttgcttaacttacatgggtatgctagaatcacggtgactcattttaattgattttgcagaagttataagtgtatttt |
25520637 |
T |
|
| Q |
112 |
tttgaaaaatcacgatggatcaccatgattgcgacacgccatagtgatac----caaacctacactcaagagaatctcttaaaaggagggtaaaatatag |
207 |
Q |
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| T |
25520636 |
tttgaaaaatcacgatggatcaccatgattgtgacacaccacagtgataccatgcatacatatacttaagagaatctcttaaaaggagggaaaaatatag |
25520537 |
T |
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| Q |
208 |
aattttcattttgattcttagatcacattgttgaaactgaaaa |
250 |
Q |
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| T |
25520536 |
aattttcattttgattcttagattacattcttgaaactgaaaa |
25520494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 28307856 - 28307914
Alignment:
| Q |
84 |
tgattttgcagaagttataag-tgtattttttgaaaaatcacgatggatcaccatgatt |
141 |
Q |
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| T |
28307856 |
tgattttgtagaagttataaaatgtagtttttaaaaaatcacgatggatcactatgatt |
28307914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 49393 - 49316
Alignment:
| Q |
13 |
taggtaaaaagcaaacccttgcgttgcttaacttacatgagtatactagaatcacggtgactcattttaattgatttt |
90 |
Q |
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||||||||||| || |||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |
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| T |
49393 |
taggtaaaaagagaatcctttggttgcttaacttacatggatatgttagaatcacagtgactcattttaattgatttt |
49316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 49267 - 49212
Alignment:
| Q |
188 |
aaaaggagggtaaaatatagaattttcattttgattcttagatcacattgttgaaa |
243 |
Q |
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|||||||| | |||||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
49267 |
aaaaggagcggaaaataaagaattttcatttggattcttagattacattgttgaaa |
49212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 5277009 - 5277048
Alignment:
| Q |
102 |
aagtgtattttttgaaaaatcacgatggatcaccatgatt |
141 |
Q |
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| T |
5277009 |
aagtgtattttttgaaaaatcatgatagatcaccatgatt |
5277048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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