View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289_low_21 (Length: 289)
Name: NF1289_low_21
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 27066042 - 27065778
Alignment:
| Q |
1 |
ttataataaaactactgcttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttg |
100 |
Q |
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| T |
27066042 |
ttataataaaactactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttg |
27065943 |
T |
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| Q |
101 |
aaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcct |
200 |
Q |
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| T |
27065942 |
aaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatctt |
27065843 |
T |
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| Q |
201 |
ctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatg |
265 |
Q |
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| T |
27065842 |
ctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgatg |
27065778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 27079742 - 27079507
Alignment:
| Q |
18 |
cttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttat |
117 |
Q |
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| T |
27079742 |
cttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttat |
27079643 |
T |
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| Q |
118 |
gcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatg |
217 |
Q |
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| T |
27079642 |
gcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttg |
27079543 |
T |
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| Q |
218 |
aagcaggtttttaaggtgtccgagaattcttcgatg |
253 |
Q |
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| T |
27079542 |
aagcaagtttttaaggtgtctgagaattcctcgatg |
27079507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 63 - 246
Target Start/End: Complemental strand, 27053538 - 27053355
Alignment:
| Q |
63 |
tggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
162 |
Q |
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| T |
27053538 |
tggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgttttt |
27053439 |
T |
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| Q |
163 |
gcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattc |
246 |
Q |
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| T |
27053438 |
gccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattc |
27053355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 14866036 - 14866157
Alignment:
| Q |
41 |
agtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggata |
140 |
Q |
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||||||||||||| |||||| |||| | |||||||||||||| | |||||||||||||| ||||| || || ||||||||||| ||||| || |||| |
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| T |
14866036 |
agtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagata |
14866135 |
T |
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| Q |
141 |
aattaccgccaaggtcgttttt |
162 |
Q |
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||||||| |||||||||||| |
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| T |
14866136 |
aattacctaaaaggtcgttttt |
14866157 |
T |
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