View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1289_low_24 (Length: 279)
Name: NF1289_low_24
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_low_24 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 41722692 - 41722957
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41722692 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatc |
41722791 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722792 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtg |
41722891 |
T |
|
| Q |
214 |
tgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722892 |
tgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttga |
41722957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 34359471 - 34359667
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
34359471 |
aggagggaagcgtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagccgatcaacgctgacaagtttatatggtgtcgatc |
34359570 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359571 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcacaaaagtgactttaagtgggagattgtgaacat |
34359667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 41718154 - 41718231
Alignment:
| Q |
202 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718154 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttga |
41718231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 48697856 - 48697661
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48697856 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatc |
48697757 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaaca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697756 |
ctcgtatggcctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
48697661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 30946218 - 30946023
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30946218 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatc |
30946119 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaaca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30946118 |
ctcgtatggcctattggaaacgtagcaaccgaagtcggtaaggtagagagattttgagagctcacaaaagtgactttaagtgggagactgtgaaca |
30946023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 42270185 - 42270390
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
42270185 |
aggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatc |
42270284 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtg |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270285 |
tttgtatggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtg |
42270384 |
T |
|
| Q |
214 |
tgaaca |
219 |
Q |
| |
|
|||||| |
|
|
| T |
42270385 |
tgaaca |
42270390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 2003173 - 2003267
Alignment:
| Q |
22 |
agtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
116 |
Q |
| |
|
||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| ||| || ||| ||||||||||||||| |
|
|
| T |
2003173 |
agtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgttgacaaatttacatggtgtcgatcctc |
2003267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 26976928 - 26976720
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
26976928 |
aggagggaagcgtggatatgcaaaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatc |
26976829 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976828 |
ctcgtatggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtg |
26976729 |
T |
|
| Q |
214 |
tgaacacat |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
26976728 |
tgaacacat |
26976720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 27874744 - 27874539
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
27874744 |
aggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatc |
27874645 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtg |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874644 |
tttgtatggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtg |
27874545 |
T |
|
| Q |
214 |
tgaaca |
219 |
Q |
| |
|
|||||| |
|
|
| T |
27874544 |
tgaaca |
27874539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 18967350 - 18967543
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||| |||||| ||||||||||||| |
|
|
| T |
18967350 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgacaaaaccaatcaatgctgacaagtttatatggtgtcgatc |
18967449 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
207 |
Q |
| |
|
||| |||||||||||| |||| ||||||| || | || |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18967450 |
ctcctatggcctattgaaaacatagcaacatgaatgggtaaggtagagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
18967543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 21966493 - 21966604
Alignment:
| Q |
94 |
aagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaact-ggagttggcaaggtagagagattttggaagctcacaaaagtgactttaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| || || ||||||||| || ||| |
|
|
| T |
21966493 |
aagtttgtatggtgtcgatcctcgtatg------ttgaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggctgtaa |
21966586 |
T |
|
| Q |
193 |
gtgggagattgtgaacat |
210 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
21966587 |
gtgggatattgtgaacat |
21966604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 30968569 - 30968629
Alignment:
| Q |
150 |
ggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968569 |
ggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaacat |
30968629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 1472492 - 1472398
Alignment:
| Q |
22 |
agtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
116 |
Q |
| |
|
||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||| || ||| ||||||||||||||| |
|
|
| T |
1472492 |
agtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtcgatcctc |
1472398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 1472378 - 1472341
Alignment:
| Q |
175 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1472378 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
1472341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 21965669 - 21965725
Alignment:
| Q |
20 |
gaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaa |
76 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
21965669 |
gaagggtggatatgcagaatgctcacaccaatgataacctagaagatgtaatgacaa |
21965725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 54545427 - 54545632
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
54545427 |
aggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatc |
54545526 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtg |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545527 |
ctcgtatggcctattggaaacatagcaactgaagttggcaaggtagagaggctttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtg |
54545626 |
T |
|
| Q |
214 |
tgaaca |
219 |
Q |
| |
|
|||||| |
|
|
| T |
54545627 |
tgaaca |
54545632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 5819310 - 5819102
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
5819310 |
aggagggaagcgtggatatgcaaaagattcacactaatgataacctagcagttgtaatgacaaagccgatcaacactgacaagtttatatggcgtcgatc |
5819211 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| | |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5819210 |
ctcgtatggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtaactttaagtgggagattgtgaacatgtg |
5819111 |
T |
|
| Q |
214 |
tgaacacat |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
5819110 |
tgaacacat |
5819102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 42589352 - 42589389
Alignment:
| Q |
175 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42589352 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
42589389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 9440126 - 9439921
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
9440126 |
aggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatc |
9440027 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440026 |
ttcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtg |
9439927 |
T |
|
| Q |
214 |
tgaaca |
219 |
Q |
| |
|
|||||| |
|
|
| T |
9439926 |
tgaaca |
9439921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 24594404 - 24594367
Alignment:
| Q |
175 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24594404 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
24594367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 24594518 - 24594424
Alignment:
| Q |
22 |
agtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
116 |
Q |
| |
|
||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||| || ||| ||||||| ||||||| |
|
|
| T |
24594518 |
agtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtagatcctc |
24594424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 829761 - 829958
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||| ||||| ||||| ||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
829761 |
aggaaggaagcgtggatatgtagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatc |
829860 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
829861 |
ctcgtatggcctattggaaacatagcaactggagttggcaaggtagagagactttgaatgctcacaaaagtagctttaagtgggatattgtgaacatg |
829958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 28715361 - 28715550
Alignment:
| Q |
22 |
agtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatg |
121 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||||| |||| |
|
|
| T |
28715361 |
agtgtgaatatgcataagattcacaccaatgataacctagcagatgtaatgacaaagtcgatcaatgctgacaagtttctatagtgtcgatcctcatatg |
28715460 |
T |
|
| Q |
122 |
gcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg |
211 |
Q |
| |
|
|||||||| ||| |||||||| | ||||||| |||||||||||||||| | || | ||| || ||||||||||||||||||||||||| |
|
|
| T |
28715461 |
gcctattgaaaatgtagcaacggaagttggcgaggtagagagattttgaattctaaaaaatgtagctttaagtgggagattgtgaacatg |
28715550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 13840960 - 13840763
Alignment:
| Q |
19 |
ggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcct--- |
115 |
Q |
| |
|
|||||| |||| ||||||||||||| || | |||||| ||| | ||||| ||||||| |||||||| || |||||||||||||| ||||||||| |
|
|
| T |
13840960 |
ggaagtatggatgtgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccgatcaatgctaataagtttgtatggcgtcgatcctggg |
13840861 |
T |
|
| Q |
116 |
-cgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgt |
212 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
13840860 |
aagtatgacctattggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcacaaaagtagatttaagtgagagattgtaaacatgt |
13840763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 28070 - 27877
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| || ||||| |||| |||||| ||||||||||||| |
|
|
| T |
28070 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagtagatgtgattacaaaaccaatcaatgctgacaagtttatatggtgtcgatc |
27971 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
27970 |
ctcctatggcctattggaaacgtagcaacatgaatgggcaaggtaaagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
27877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 2324149 - 2323956
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatc |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| || |||||| ||||||||||||| |
|
|
| T |
2324149 |
aggagggaagtgtggatatgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaatgctaccaagtttatatggtgtcgatc |
2324050 |
T |
|
| Q |
114 |
ctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2324049 |
atcgtatggactattggaaacgtagcaacatgaatgggcaaggtagagagattttggaagctcacaaaagtggctttaagtgggagattgtgaa |
2323956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 22510199 - 22510398
Alignment:
| Q |
14 |
aggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga-tcaacactgataagtttgtatggtgtcgat |
112 |
Q |
| |
|
|||||||| |||||| |||| ||||||||| || ||||||| | ||||||||| |||| |||| | | |||| | |||||||||| ||||||||| || |
|
|
| T |
22510199 |
aggagggacatgtggatatgccgaagattcaaactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaat |
22510298 |
T |
|
| Q |
113 |
cctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgt |
212 |
Q |
| |
|
|| | ||||||||| |||| ||| ||| ||||||||||||||||||| |||||| |||||| ||||| | |||||| | ||||| |||||||||| |
|
|
| T |
22510299 |
ccctctgtggcctattcaaaacatagaaacaggagttggcaaggtagagatattttgaaagctcccaaaaatagctttaatt--gagatagtgaacatgt |
22510396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 7504790 - 7504696
Alignment:
| Q |
22 |
agtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
116 |
Q |
| |
|
||||| || ||||| || ||||||||||| || ||| |||||||||| ||||||||| | ||||| ||||| || ||| ||||||||||||||| |
|
|
| T |
7504790 |
agtgttgatatgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatactgacaaatttacatggtgtcgatcctc |
7504696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 7504676 - 7504639
Alignment:
| Q |
175 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
212 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
7504676 |
tcacaaaagtaactttaagtgggagattgtgaagatgt |
7504639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 41413523 - 41413422
Alignment:
| Q |
108 |
tcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
207 |
Q |
| |
|
||||| ||||| ||| ||||| ||||| ||||||| || | ||||||| ||||| |||||| |||||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
41413523 |
tcgattctcgtttggtctattagaaacatagcaacaagaatgggcaaggcagagatattttgaaagctcgcaaaagtagttttaaatggaagattgtgaa |
41413424 |
T |
|
| Q |
208 |
ca |
209 |
Q |
| |
|
|| |
|
|
| T |
41413423 |
ca |
41413422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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