View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1289_low_28 (Length: 252)

Name: NF1289_low_28
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1289_low_28
NF1289_low_28
[»] chr2 (13 HSPs)
chr2 (1-239)||(39962116-39962358)
chr2 (45-124)||(1741969-1742048)
chr2 (45-92)||(32821863-32821910)
chr2 (47-92)||(11063544-11063589)
chr2 (45-92)||(4550801-4550848)
chr2 (45-92)||(5452380-5452427)
chr2 (45-96)||(27237858-27237909)
chr2 (45-80)||(34652017-34652052)
chr2 (47-85)||(9878658-9878696)
chr2 (47-81)||(30538153-30538187)
chr2 (41-94)||(43985259-43985312)
chr2 (47-92)||(44606079-44606124)
chr2 (48-96)||(11344735-11344783)
[»] chr6 (11 HSPs)
chr6 (41-92)||(32917247-32917298)
chr6 (45-92)||(32976032-32976079)
chr6 (48-92)||(2027767-2027811)
chr6 (45-93)||(21920137-21920185)
chr6 (45-96)||(27857412-27857463)
chr6 (45-83)||(4420697-4420735)
chr6 (45-81)||(2117457-2117493)
chr6 (47-91)||(9027634-9027678)
chr6 (45-109)||(27595519-27595583)
chr6 (48-96)||(33385586-33385634)
chr6 (45-81)||(34405167-34405203)
[»] chr4 (10 HSPs)
chr4 (47-90)||(44119179-44119222)
chr4 (50-109)||(8328071-8328130)
chr4 (45-96)||(52754653-52754704)
chr4 (41-92)||(2996623-2996674)
chr4 (45-84)||(28614785-28614824)
chr4 (45-92)||(41097225-41097272)
chr4 (51-96)||(25717653-25717698)
chr4 (48-92)||(6987710-6987754)
chr4 (48-92)||(11264358-11264402)
chr4 (44-92)||(19429481-19429529)
[»] scaffold0393 (1 HSPs)
scaffold0393 (199-239)||(11589-11629)
[»] chr1 (10 HSPs)
chr1 (47-91)||(37941955-37941999)
chr1 (48-92)||(4549510-4549554)
chr1 (51-90)||(23373284-23373323)
chr1 (41-92)||(28935845-28935896)
chr1 (59-96)||(5157140-5157177)
chr1 (47-92)||(15579538-15579583)
chr1 (45-90)||(15581308-15581353)
chr1 (45-82)||(17631081-17631118)
chr1 (45-81)||(17628653-17628689)
chr1 (52-88)||(32182467-32182503)
[»] chr7 (5 HSPs)
chr7 (45-92)||(48157089-48157136)
chr7 (47-92)||(39334249-39334294)
chr7 (45-92)||(12234858-12234905)
chr7 (48-92)||(30751576-30751620)
chr7 (48-92)||(36751885-36751929)
[»] chr5 (5 HSPs)
chr5 (45-92)||(11457152-11457199)
chr5 (45-92)||(38047848-38047895)
chr5 (46-89)||(32172708-32172751)
chr5 (45-91)||(40499696-40499742)
chr5 (44-88)||(11296972-11297016)
[»] chr3 (14 HSPs)
chr3 (47-109)||(37273190-37273252)
chr3 (45-109)||(24603704-24603768)
chr3 (45-80)||(31010456-31010491)
chr3 (41-92)||(49772637-49772688)
chr3 (199-233)||(2409258-2409292)
chr3 (48-90)||(43115113-43115155)
chr3 (47-92)||(2923534-2923579)
chr3 (47-92)||(11039308-11039353)
chr3 (48-97)||(20170910-20170959)
chr3 (45-82)||(20192585-20192622)
chr3 (45-94)||(34254775-34254824)
chr3 (48-96)||(22232890-22232937)
chr3 (48-92)||(24624267-24624311)
chr3 (50-82)||(49465915-49465947)
[»] chr8 (3 HSPs)
chr8 (48-94)||(4055583-4055629)
chr8 (45-91)||(30987961-30988007)
chr8 (45-91)||(33553294-33553340)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39962358 - 39962116
Alignment:
Q  1 gacttttcttgtggtatgacgagccccatgttactaggataaaaagcttatggacatgtcataaattgtttctataagctcttccaaacagtttcatggg 100  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39962358 gacttttcttgtggtatgacgagccc-atgttattaggataaaaagcttatggacatgtcataaattgtttctataagctctcccaaacagtttcatggg 39962260  T
Q  101 tgcttatgcggtagtcgataggtagggtaaggt-----cacaaatacttcaaaatgaactgtttttatcttgttgtaattattagttcttgttgaagggt 195  Q
    ||||||||||||||| |||||||| ||||||||     |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39962259 tgcttatgcggtagttgataggtaaggtaaggtaaggtcacaaatactacaaaatgaactgtttttatcttgttgtaattattagttcttgttgaagggt 39962160  T
Q  196 agcaagtttcaaagtgagaatgagtgcaagtaatttggcaacag 239  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  39962159 agcaagtttcaaagtgagcatgagtgcaagtaatttggcaacag 39962116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 1742048 - 1741969
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagtttcatgggtgcttatgcggtagtcgataggta 124  Q
    |||||||| ||||||||||| ||||||| ||||||||| ||||| ||| |||||||||||||||| |||||| |||||||    
T  1742048 agcttatgcacatgtcataagttgtttccataagctctcccaaatagtctcatgggtgcttatgcagtagtcaataggta 1741969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 32821863 - 32821910
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  32821863 agcttatggacatgtcataagttgtttctataaactcttccaaacagt 32821910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 11063544 - 11063589
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||||||||||||||||  |||||| |||||||||||||||||||    
T  11063544 cttatggacatgtcataatatgtttccataagctcttccaaacagt 11063589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 4550801 - 4550848
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||| ||||||||||| ||||||| ||||||||| |||||||||    
T  4550801 agcttatgaacatgtcataagttgtttccataagctctcccaaacagt 4550848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 5452380 - 5452427
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||| ||||||||||| || ||||||||| ||||||||||||||    
T  5452380 agcttatgtacatgtcataagttttttctataatctcttccaaacagt 5452427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 27237909 - 27237858
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagtttca 96  Q
    |||||||| |||||||||||  |||||||||||| ||| |||||||||||||    
T  27237909 agcttatgtacatgtcataagctgtttctataagttctaccaaacagtttca 27237858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 34652052 - 34652017
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagct 80  Q
    |||||||||||||||||||| |||||||||||||||    
T  34652052 agcttatggacatgtcataagttgtttctataagct 34652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 9878696 - 9878658
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttcc 85  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  9878696 cttatggacatgtcataagttgtttccataagctcttcc 9878658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 30538187 - 30538153
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctc 81  Q
    |||||||||||||||||| ||||||||||||||||    
T  30538187 cttatggacatgtcataagttgtttctataagctc 30538153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 43985259 - 43985312
Alignment:
Q  41 aaaaagcttatggacatgtcataaattgtttctataagctcttccaaacagttt 94  Q
    |||||||||||||||||||||||| |||||||  ||| ||||  ||||||||||    
T  43985259 aaaaagcttatggacatgtcataagttgtttcagtaatctctctcaaacagttt 43985312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 44606124 - 44606079
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||| ||||||  ||||| |||||||||||||    
T  44606124 cttatggacatgtcataagttgttttcataagttcttccaaacagt 44606079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 11344783 - 11344735
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagtttca 96  Q
    ||||||||||||||||| ||||||| ||||| |||  ||||||||||||    
T  11344783 ttatggacatgtcataagttgtttccataaggtctgtcaaacagtttca 11344735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 32917247 - 32917298
Alignment:
Q  41 aaaaagcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  32917247 aaaaagcttatggacatgtcataagttgtttccataagctctcccaaacagt 32917298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 32976032 - 32976079
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||||    
T  32976032 agcttatggaaatgtcataagctgtttctataagctcttccaaacagt 32976079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 2027811 - 2027767
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||    
T  2027811 ttattgacatgtcataagttgtttctataagctctcccaaacagt 2027767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 21920137 - 21920185
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagtt 93  Q
    ||||||||||||||| ||||| |||||||| ||||||| ||||||||||    
T  21920137 agcttatggacatgttataaaatgtttctacaagctctcccaaacagtt 21920185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 27857412 - 27857463
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagtttca 96  Q
    |||||||||| ||||||||| ||||||  ||||||||| |||||||||||||    
T  27857412 agcttatggagatgtcataagttgttttcataagctctcccaaacagtttca 27857463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 4420697 - 4420735
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctctt 83  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  4420697 agcttatgaacatgtcataatttgtttctataagctctt 4420735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 2117457 - 2117493
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctc 81  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  2117457 agcttatagacatgccataaattgtttctataagctc 2117493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 9027634 - 9027678
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacag 91  Q
    |||||||||||||||||| || |||| |||||||||| |||||||    
T  9027634 cttatggacatgtcataagttatttccataagctctttcaaacag 9027678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 27595583 - 27595519
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagtttcatgggtgcttatgc 109  Q
    |||||||| ||||||||||| ||||||| ||||  ||| ||||||||| ||||  ||||||||||    
T  27595583 agcttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttatgc 27595519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 33385586 - 33385634
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagtttca 96  Q
    ||||||||||||||| |  |||||| |||| ||||||||||||||||||    
T  33385586 ttatggacatgtcatgagctgtttccataaactcttccaaacagtttca 33385634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 34405167 - 34405203
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctc 81  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  34405167 agcttatggacatggcataagttgtttctataagctc 34405203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 44119222 - 44119179
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaaca 90  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  44119222 cttatggacatgtcataaattgtttctataagctcttctaaaca 44119179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 8328130 - 8328071
Alignment:
Q  50 atggacatgtcataaattgtttctataagctcttccaaacagtttcatgggtgcttatgc 109  Q
    ||||||||||||||||||||||  ||||||| ||||||||||| ||||  ||||||||||    
T  8328130 atggacatgtcataaattgttttcataagctattccaaacagtctcataagtgcttatgc 8328071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 52754653 - 52754704
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagtttca 96  Q
    |||||||||||| |||||||| |||||  |||||||||||||||||||||||    
T  52754653 agcttatggacacgtcataaactgttttcataagctcttccaaacagtttca 52754704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 2996623 - 2996674
Alignment:
Q  41 aaaaagcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||||||||| ||||||  |||||||||  ||||||||    
T  2996623 aaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagt 2996674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 28614824 - 28614785
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttc 84  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  28614824 agcttatggatatgtcataaattgtttccataagctcttc 28614785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 41097272 - 41097225
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||| | ||||||||||||||||| || ||||||    
T  41097272 agcttatggacatgtcattagttgtttctataagctctcccgaacagt 41097225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 25717653 - 25717698
Alignment:
Q  51 tggacatgtcataaattgtttctataagctcttccaaacagtttca 96  Q
    |||||| ||||||| ||||||| ||||||||||||||||| |||||    
T  25717653 tggacaagtcataagttgtttccataagctcttccaaacaatttca 25717698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 6987754 - 6987710
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||||||||||||||| |||| || ||||||||| |||||||||    
T  6987754 ttatggacatgtcataagttgtatccataagctctcccaaacagt 6987710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 11264358 - 11264402
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||||||||||||||| ||| ||||||| ||||| |||||||||    
T  11264358 ttatggacatgtcataagttgattctatatgctctcccaaacagt 11264402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 19429529 - 19429481
Alignment:
Q  44 aagcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||||||||||||||||||| || | || ||||||||| |||||||||    
T  19429529 aagcttatggacatgtcataagttttctccataagctctcccaaacagt 19429481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 11589 - 11629
Alignment:
Q  199 aagtttcaaagtgagaatgagtgcaagtaatttggcaacag 239  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11589 aagtttcaaagtgagaatgagtgcaagtaatttggtaacag 11629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 37941999 - 37941955
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacag 91  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  37941999 cttatggacatgtcataaattgtttctataagctctctcaaacag 37941955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 4549554 - 4549510
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||    
T  4549554 ttatagacatgtcataagttgtttctataagctctcccaaacagt 4549510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 23373323 - 23373284
Alignment:
Q  51 tggacatgtcataaattgtttctataagctcttccaaaca 90  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  23373323 tggacatgtcataagttgtttctataagctctcccaaaca 23373284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 28935896 - 28935845
Alignment:
Q  41 aaaaagcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||| ||||||||||||||||||| ||  |||||||||||| |||||||||    
T  28935896 aaaaaacttatggacatgtcataaactgactctataagctctcccaaacagt 28935845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 5157140 - 5157177
Alignment:
Q  59 tcataaattgtttctataagctcttccaaacagtttca 96  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  5157140 tcataagttgtttctataagctctcccaaacagtttca 5157177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 15579538 - 15579583
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||| ||||||| | ||||||| |||||||||    
T  15579538 cttatggacatgtcataagttgtttccacaagctctcccaaacagt 15579583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 15581308 - 15581353
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaaca 90  Q
    ||||||| |||||||||||| ||||||| || ||||||||||||||    
T  15581308 agcttatagacatgtcataagttgtttccattagctcttccaaaca 15581353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 17631118 - 17631081
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctct 82  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  17631118 agcttatggacatgtcataagttgtttccataagctct 17631081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 17628653 - 17628689
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctc 81  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  17628653 agcttatggacatgtcataagttgtttccataagctc 17628689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 32182467 - 32182503
Alignment:
Q  52 ggacatgtcataaattgtttctataagctcttccaaa 88  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  32182467 ggacatgtcataaattgtttttataagctctttcaaa 32182503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 48157136 - 48157089
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  48157136 agcttatggacatggcataagttgtttctataagctctcccaaacagt 48157089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 39334249 - 39334294
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||    
T  39334249 cttatggacatgtcataaattgtttccataaactctaccaaacagt 39334294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 12234905 - 12234858
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||||| |||||||||||| ||||||||||||||| |||||| ||||    
T  12234905 agcttatagacatgtcataagttgtttctataagctattccaagcagt 12234858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 30751576 - 30751620
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||  ||||| |||||||||||||||| |||||||||    
T  30751576 ttatggacatgctataaactgtttctataagctctcccaaacagt 30751620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 36751929 - 36751885
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||||||||||||||||||||||  | |||||||| ||||||||    
T  36751929 ttatggacatgtcataaattgttttcacaagctcttacaaacagt 36751885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 11457152 - 11457199
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  11457152 agcttatggacatgtcataagttgtttccataagctcttcaaaacagt 11457199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 38047895 - 38047848
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  38047895 agcttatggacatgtcataagttgtttccataagctctcccaaacagt 38047848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 32172708 - 32172751
Alignment:
Q  46 gcttatggacatgtcataaattgtttctataagctcttccaaac 89  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||    
T  32172708 gcttatggacatgtcataagttgtttccataagctctcccaaac 32172751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 40499742 - 40499696
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacag 91  Q
    |||||||||||||||||||| ||||||| ||||||||| | ||||||    
T  40499742 agcttatggacatgtcataagttgtttccataagctctcctaaacag 40499696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 11297016 - 11296972
Alignment:
Q  44 aagcttatggacatgtcataaattgtttctataagctcttccaaa 88  Q
    ||||||||||||| ||||||| ||||||  |||||||||||||||    
T  11297016 aagcttatggacaggtcataagttgttttcataagctcttccaaa 11296972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 37273190 - 37273252
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacagtttcatgggtgcttatgc 109  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||| |||   ||||||||||    
T  37273190 cttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgc 37273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 24603768 - 24603704
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagtttcatgggtgcttatgc 109  Q
    ||||||||| ||||||||||| |||||| ||||| ||| ||||||||| |||  |||||||||||    
T  24603768 agcttatgggcatgtcataaactgtttcaataagttctcccaaacagtctcagaggtgcttatgc 24603704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 31010456 - 31010491
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagct 80  Q
    |||||||||||||||||||| |||||||||||||||    
T  31010456 agcttatggacatgtcataagttgtttctataagct 31010491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 49772688 - 49772637
Alignment:
Q  41 aaaaagcttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| | |||||||    
T  49772688 aaaaagcttatggacatctcataagttgtttccataagctctcctaaacagt 49772637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 2409258 - 2409292
Alignment:
Q  199 aagtttcaaagtgagaatgagtgcaagtaatttgg 233  Q
    ||||||| |||||||||||||||||||||||||||    
T  2409258 aagtttcgaagtgagaatgagtgcaagtaatttgg 2409292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 43115113 - 43115155
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaaca 90  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||    
T  43115113 ttatggacatgtcataagttgtttccataaactcttccaaaca 43115155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 2923534 - 2923579
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||  ||| ||||||||||||| |||||||||||||    
T  2923534 cttatggacatgtagtaagttgtttctataagttcttccaaacagt 2923579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 11039353 - 11039308
Alignment:
Q  47 cttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    ||||||||||||||||||  |||||| |||||||||| ||||||||    
T  11039353 cttatggacatgtcataatatgtttccataagctctttcaaacagt 11039308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 20170910 - 20170959
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagtttcat 97  Q
    ||||||| ||||||||| |||||| ||||||||||| |||||||| ||||    
T  20170910 ttatggatatgtcataagttgtttttataagctcttacaaacagtctcat 20170959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 20192622 - 20192585
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctct 82  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  20192622 agcttatggacatgtcataagctgtttctataagctct 20192585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 34254824 - 34254775
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacagttt 94  Q
    |||||||||| |||||||||| |||||  ||||||| |||||||||||||    
T  34254824 agcttatggatatgtcataaactgttttcataagcttttccaaacagttt 34254775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 22232890 - 22232937
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagtttca 96  Q
    ||||||||||||||||| |||||||||||| ||| || |||||||||||    
T  22232890 ttatggacatgtcataagttgtttctataaactc-tcaaaacagtttca 22232937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 24624267 - 24624311
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagt 92  Q
    |||||||||||||||||  |||||  |||||||||||||||||||    
T  24624267 ttatggacatgtcataagctgttttcataagctcttccaaacagt 24624311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 49465947 - 49465915
Alignment:
Q  50 atggacatgtcataaattgtttctataagctct 82  Q
    ||||||||||||||| |||||||||||||||||    
T  49465947 atggacatgtcataagttgtttctataagctct 49465915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 4055629 - 4055583
Alignment:
Q  48 ttatggacatgtcataaattgtttctataagctcttccaaacagttt 94  Q
    ||||||||||||||||| || ||||||||| |||| |||||||||||    
T  4055629 ttatggacatgtcataagttatttctataaactctcccaaacagttt 4055583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 30988007 - 30987961
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacag 91  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||    
T  30988007 agcttatggacatgtcataagttgtttccataagctctctcaaacag 30987961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 33553294 - 33553340
Alignment:
Q  45 agcttatggacatgtcataaattgtttctataagctcttccaaacag 91  Q
    |||||| ||||||||||||| ||| ||| ||||||||||||||||||    
T  33553294 agcttagggacatgtcataagttgcttcaataagctcttccaaacag 33553340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University