View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289_low_3 (Length: 612)
Name: NF1289_low_3
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 14 - 583
Target Start/End: Complemental strand, 37290166 - 37289597
Alignment:
| Q |
14 |
ctgttgcaatccacacataaccactagtcatcattccaagattcttggcaatagaaaaaacatttaaaccataatcgggattaacatgaacaacaaagac |
113 |
Q |
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| T |
37290166 |
ctgttgcaatccacacataaccactagtcatcattccaagattcttggcaatagaaaaaacatttaaaccataatcgggattaacatgaacaacaaagac |
37290067 |
T |
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| Q |
114 |
tcttgattccattaagttcacactatttagcaagatactgatatcattcttggtggctccaggagataatgcagctttgtaagatatcttgccacgtttc |
213 |
Q |
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| T |
37290066 |
tcttgattccattaagttcacactatttagcaagatactgatatcattcttggtggctccaggagataatgcagctttgtaagatatcttgccgcgtttc |
37289967 |
T |
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| Q |
214 |
tttgctagcgcatctccaagtattgaaattccgtttcttccataatcatcatctacataaatggcaattacttgcctccatctataaaaatcaacaatgt |
313 |
Q |
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| T |
37289966 |
tttgctagcgcatctccaagtattgaaattccgtttcttccataatcatcatctacataaatggcaattacttgcctccatctacaaaaatcaacaatgt |
37289867 |
T |
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| Q |
314 |
ctgcaattgcatacatctgaaaatagtcgctgtgcgtggttcggacaaaatacggaaattgcagagaagatagggtagggtctgttgccccaaatgaaag |
413 |
Q |
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| T |
37289866 |
ctgcaattgcatacatctgaaaatagtcgctgtgcgtggttcggacaaaatacggaaattgcagagaagatagggtagggtctgttgccccaaatgaaag |
37289767 |
T |
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| Q |
414 |
aagaggtacatggagttcattagctacatgagcgatgatatgagctattcccgaggactgtggaccaattgtggcaatcacttcattttccatcaactgc |
513 |
Q |
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| T |
37289766 |
aagaggtacatggagttcattagctacatgagcgatgatatgagctattcctgaggactgtggaccaattgtggcaatcacttcattctccatcaactgc |
37289667 |
T |
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| Q |
514 |
aaagctacatcatcnnnnnnnttaatgaagcttgttcacttctttttcaaacacagagacttgcaaatag |
583 |
Q |
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| T |
37289666 |
aaagctacatcatcaaaaaaattaatgaagcttgttcacttctttttcaaacacagagacttgcaaatag |
37289597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 54175970 - 54175910
Alignment:
| Q |
247 |
tttcttccataatcatcatctacataaatggcaattacttgcctccatctataaaaatcaa |
307 |
Q |
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|||| ||||||||||||||| |||||||||| ||| |||| |||||| ||||||||||| |
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| T |
54175970 |
tttcgtccataatcatcatccacataaatggtaataacttctttccatccataaaaatcaa |
54175910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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