View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289_low_30 (Length: 251)
Name: NF1289_low_30
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 39731717 - 39731886
Alignment:
| Q |
53 |
gattacgacatactaaagtaatgccggtgttgtgagtgacactaaattatgtaacgatagtgttaagtgaccatattttaaggctctaaataaaaacatt |
152 |
Q |
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| T |
39731717 |
gattacgacatactaaagtaatgccggtgttgtgagtgacactaaattatgtaacgatagtgttaagtgaccatattttaaggctctaaataaaaacatt |
39731816 |
T |
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| Q |
153 |
atagaaaagggaaaaagaaataaagagtgcgacttggcgtcaccaaaccaagttcctccttggatcttta |
222 |
Q |
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| T |
39731817 |
atagaaaagggaaaaagaaataaagagtgcgacttggcgtcaccaaaccaagttcctccttggatcttta |
39731886 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 39731668 - 39731700
Alignment:
| Q |
10 |
aaaaaaccataatggattagagacatagtttcc |
42 |
Q |
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| T |
39731668 |
aaaaaaccataatggattacagacatagtttcc |
39731700 |
T |
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