View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1289_low_6 (Length: 543)

Name: NF1289_low_6
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1289_low_6
NF1289_low_6
[»] chr2 (15 HSPs)
chr2 (16-385)||(410391-410760)
chr2 (83-298)||(821334-821549)
chr2 (91-329)||(1399985-1400220)
chr2 (86-329)||(1403703-1403946)
chr2 (450-514)||(410265-410329)
chr2 (86-286)||(973644-973844)
chr2 (86-286)||(965073-965279)
chr2 (454-514)||(965460-965520)
chr2 (450-514)||(821159-821223)
chr2 (187-298)||(957815-957926)
chr2 (464-514)||(974016-974066)
chr2 (462-510)||(982083-982131)
chr2 (452-513)||(824897-824955)
chr2 (16-67)||(957677-957728)
chr2 (263-341)||(989586-989664)
[»] chr3 (3 HSPs)
chr3 (83-348)||(45810113-45810378)
chr3 (450-512)||(45810477-45810539)
chr3 (270-342)||(8316666-8316738)
[»] chr7 (5 HSPs)
chr7 (88-298)||(12105508-12105718)
chr7 (83-291)||(28449412-28449617)
chr7 (450-512)||(12105286-12105348)
chr7 (450-514)||(1446001-1446065)
chr7 (450-514)||(1459314-1459378)
[»] chr6 (2 HSPs)
chr6 (91-293)||(10116388-10116590)
chr6 (457-514)||(10116745-10116802)
[»] chr1 (1 HSPs)
chr1 (83-228)||(48675087-48675232)
[»] chr5 (1 HSPs)
chr5 (176-293)||(36199331-36199445)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 410760 - 410391
Alignment:
Q  16 atccaacaatttcatggtagaagatattgaagcaaaagacagaataaagaaactaccactactttcatatcaataaattgaaagttgacatgttgtagaa 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410760 atccaacaatttcttggtagaagatattgaagcaaaagacagaataaagaaactaccactactttcatatcaataaattgaaagttgacatgttgtagaa 410661  T
Q  116 gcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410660 gcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaatt 410561  T
Q  216 ttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaattcgga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  410560 ttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgtaaggtttaacgaaaagcaaggtggaacaaattcgga 410461  T
Q  316 atccacccaattttcttgatcatcttcttcaatgaactcatcctcccaattgcagccttgtaacttctgt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  410460 atccacccaattttcttgatcatcttcttcaatgaactcatcctcccaattacagccttgtaacttctgt 410391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 83 - 298
Target Start/End: Complemental strand, 821549 - 821334
Alignment:
Q  83 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 182  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||  |||||| | ||||||| || ||| ||||| ||||||| | |||| |||||||    
T  821549 tatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtttattgttgctccagattgtcatag 821450  T
Q  183 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 282  Q
    ||  ||||||||| |||||||| ||||||||| |||||||||||||||||  |  |||| ||||||||| ||| |||||||| ||| |||||||||||||    
T  821449 tttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaag 821350  T
Q  283 gtttaatgaaaagcaa 298  Q
    ||||||||||| ||||    
T  821349 gtttaatgaaacgcaa 821334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 91 - 329
Target Start/End: Complemental strand, 1400220 - 1399985
Alignment:
Q  91 aattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaa 190  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||| ||||||| |||| | |  | || ||| |||| |||| | |||||||  ||||    
T  1400220 aattgaaagttgacatgttacagaagcccttggacatgagaataatactctttctgctttgggccatctcatgtagcaccagattggcatagtttctaaa 1400121  T
Q  191 actcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatg 290  Q
    |||||||||||||  ||||||||  |||||||||||||| ||  | ||||| ||||| ||    | |||||||| ||| |||||||||||||||||||||    
T  1400120 actcttgcattctgcagaataaaccttgctaacataatgcgattacgttgttggccttca---tcaaagtcccgcatattgcaagttgtaaggtttaatg 1400024  T
Q  291 aaaagcaaggtgaaacaaattcggaatccacccaatttt 329  Q
    |||  |||  || |||| |||| | ||||||||||||||    
T  1400023 aaagacaacttggaacagattcaggatccacccaatttt 1399985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 86 - 329
Target Start/End: Complemental strand, 1403946 - 1403703
Alignment:
Q  86 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttc 185  Q
    |||| ||||| |||||||||||||| ||| ||| |||||||||||||||||| ||||||| |||||| |  | |||||| |||| |||| | |||||||     
T  1403946 caatcaattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttaggccatctcttgtagcaccagattgacatagttt 1403847  T
Q  186 gtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtt 285  Q
     ||||||||||||||| |  ||||||||  |||||||||||||| ||  | | ||| || || |||   | |||||||| ||| ||||||||||||||||    
T  1403846 ctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtt 1403747  T
Q  286 taatgaaaagcaaggtgaaacaaattcggaatccacccaatttt 329  Q
    |||||||| ||||  || |||  |||| | ||||||||||||||    
T  1403746 taatgaaaggcaacttggaactgattcaggatccacccaatttt 1403703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 450 - 514
Target Start/End: Complemental strand, 410329 - 410265
Alignment:
Q  450 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410329 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 410265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 286
Target Start/End: Original strand, 973644 - 973844
Alignment:
Q  86 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttc 185  Q
    |||| ||||||||| |||||||||| ||||||| |||| ||||  |||||| | |||||||  | |||  ||||  |||||| | ||||  ||||||||     
T  973644 caattaattgaaagctgacatgttgcagaagcctttgggcatggagataattgactttctatatcagatcgtttactgttgctccagattttcatagttt 973743  T
Q  186 gtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtt 285  Q
    ||||||||||||| ||||  ||||||||| |||||||||||||||||  | ||||| |||||||| |||| |||||||  ||| ||||||||||||||||    
T  973744 gtaaaactcttgcgttctccagaataaatcttgctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgtaaggtt 973843  T
Q  286 t 286  Q
    |    
T  973844 t 973844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 286
Target Start/End: Original strand, 965073 - 965279
Alignment:
Q  86 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttct------actttagactgtttcttgttgcacaagatagtca 179  Q
    ||||| ||||| |||||||||| || |||||||||  ||||||| ||||||| |||||||      |||||||||  |||| ||| |||| | || | ||    
T  965073 caatacattgagagttgacatgctgaagaagccctatgacatgatgataatactctttctaattctactttagaccctttcgtgtagcaccacattgaca 965172  T
Q  180 tagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgt 279  Q
    |||||  |||||||||||||||||  ||||||||| |||||| ||||||||||  | ||||| |||||||| |||| |||||||  ||| ||||||||||    
T  965173 tagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgt 965272  T
Q  280 aaggttt 286  Q
    |||||||    
T  965273 aaggttt 965279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 454 - 514
Target Start/End: Original strand, 965460 - 965520
Alignment:
Q  454 aatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 514  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  965460 aatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggc 965520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 450 - 514
Target Start/End: Complemental strand, 821223 - 821159
Alignment:
Q  450 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 514  Q
    |||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  821223 atcaaataggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggc 821159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 957815 - 957926
Alignment:
Q  187 taaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggttt 286  Q
    ||||||||| |||||||| |||||||||  |||||| ||||  |||  |  |||| ||||||||| ||| |||||||| ||| |||||||||||||||||    
T  957815 taaaactctcgcattcttcagaataaataatgctaaaataagatgattactttgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggttt 957914  T
Q  287 aatgaaaagcaa 298  Q
    ||||||| ||||    
T  957915 aatgaaaggcaa 957926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 464 - 514
Target Start/End: Original strand, 974016 - 974066
Alignment:
Q  464 ttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 514  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  974016 ttaaatttaacaaacaaacctgataaaggtcaagattttgaagcttagggc 974066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 510
Target Start/End: Original strand, 982083 - 982131
Alignment:
Q  462 tcttaaatttaacaaacaaacccgataaagttcaagattttgaagctta 510  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  982083 tcttatatttaacaaacaaacctgataaaggtcaagattttgaagctta 982131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 513
Target Start/End: Complemental strand, 824955 - 824897
Alignment:
Q  452 caaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttaggg 513  Q
    |||||| |||||||||| ||||   |||||||||||||||||||||||| ||||||||||||    
T  824955 caaatacgattcttaaacttaa---acaaacccgataaagttcaagattctgaagcttaggg 824897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 957677 - 957728
Alignment:
Q  16 atccaacaatttcatggtagaagatattgaagcaaaagacagaataaagaaa 67  Q
    ||||||||||||||||||||||| || |||| |||||||||||||| |||||    
T  957677 atccaacaatttcatggtagaagctaatgaaacaaaagacagaatagagaaa 957728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 989586 - 989664
Alignment:
Q  263 cgaataatgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaattcggaatccacccaattttcttgatcatctt 341  Q
    |||||| |||||||| |||||| | |||||| |||  ||| ||||||||| |  |||||||||||||||||||||||||    
T  989586 cgaatagtgcaagttctaaggtatgatgaaaggcattgtggaacaaattctggttccacccaattttcttgatcatctt 989664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 83 - 348
Target Start/End: Original strand, 45810113 - 45810378
Alignment:
Q  83 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 182  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||| ||||||| ||||  || ||||| | || |||||||    
T  45810113 tatcaataaattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgtcatag 45810212  T
Q  183 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 282  Q
    ||  ||||||| |||||||||| ||||||||  ||||||||||||  |||  | |||||| |||||||||||| |||||||| ||| ||||||| || ||    
T  45810213 tttctaaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtcgtgag 45810312  T
Q  283 gtttaatgaaaagcaaggtgaaacaaattcggaatccacccaattttcttgatcatcttcttcaat 348  Q
    ||||||||||| ||||| || |||| |||  | ||   |||| |||||||||||||| ||| ||||    
T  45810313 gtttaatgaaaggcaagttggaacagattttggataggcccagttttcttgatcatcatctgcaat 45810378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 512
Target Start/End: Original strand, 45810477 - 45810539
Alignment:
Q  450 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagg 512  Q
    ||||||||||||  ||||||||||||| |||||| ||||||| || ||| |||||||||||||    
T  45810477 atcaaatatgatcgttaaatttaacaagcaaacctgataaaggtcgagactttgaagcttagg 45810539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 8316738 - 8316666
Alignment:
Q  270 tgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaattcggaatccacccaattttcttgatcatcttc 342  Q
    |||||||| |||||| | || ||| |||  ||| ||||||||| |  ||||||||||||||||||||||||||    
T  8316738 tgcaagttctaaggtgtgataaaaggcattgtggaacaaattctggttccacccaattttcttgatcatcttc 8316666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 88 - 298
Target Start/End: Complemental strand, 12105718 - 12105508
Alignment:
Q  88 ataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgt 187  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||| |||| ||||||||| || ||||||||||  |  |||| |||| | |||| ||  |    
T  12105718 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttct 12105619  T
Q  188 aaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggttta 287  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||| ||   ||||||||| ||| ||| ||||| || ||  | |||||| ||||||||     
T  12105618 aaaactgttgaattcttcagaataaattttgctaacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtttg 12105519  T
Q  288 atgaaaagcaa 298  Q
    |||||| ||||    
T  12105518 atgaaaggcaa 12105508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 83 - 291
Target Start/End: Original strand, 28449412 - 28449617
Alignment:
Q  83 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 182  Q
    |||||||||| |||||||||||| ||||| || |||||||||||||||||||||   ||||||| || ||  ||||  || |  | | | ||  |||| |    
T  28449412 tatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatcatcatgg 28449511  T
Q  183 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 282  Q
    || |||||||||||||||| || |||||| || |||||| |||||||| |   | ||||||| || ||||||| |||||||||||| |||||||||||||    
T  28449512 tttgtaaaactcttgcattattaagaatatatcttgctagcataatgtca---ttttgtaggtctacaaatgcaaagtcccgaatagtgcaagttgtaag 28449608  T
Q  283 gtttaatga 291  Q
     | ||||||    
T  28449609 atgtaatga 28449617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 12105348 - 12105286
Alignment:
Q  450 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagg 512  Q
    ||||||||||||| |||||||||| ||||||||| || |||| ||||||||||||||||||||    
T  12105348 atcaaatatgattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttagg 12105286  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 1446001 - 1446065
Alignment:
Q  450 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 514  Q
    |||||||| |||| ||||| |||| ||||||||| |||||| ||||| |||||||||||||||||    
T  1446001 atcaaatacgattgttaaaattaagaaacaaacctgataaaattcaatattttgaagcttagggc 1446065  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 1459314 - 1459378
Alignment:
Q  450 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 514  Q
    ||||||||| ||| ||||| |||| ||||||||| |||||||||||||| |||||||||| ||||    
T  1459314 atcaaatataattgttaaaattaagaaacaaacctgataaagttcaagagtttgaagcttggggc 1459378  T

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Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 91 - 293
Target Start/End: Original strand, 10116388 - 10116590
Alignment:
Q  91 aattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaa 190  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| | |||||||| ||||||| |||||  |   ||| |||| | |||||||  ||||    
T  10116388 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcccgcaacaccagattgacatagtttctaaa 10116487  T
Q  191 actcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatg 290  Q
    ||||| |||||||  ||||||||  | |||| |||||||||| ||   |||||||||| |||| | || ||||| ||| | ||||||||||||||| |||    
T  10116488 actctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgtaaggtttgatg 10116587  T
Q  291 aaa 293  Q
    |||    
T  10116588 aaa 10116590  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 10116745 - 10116802
Alignment:
Q  457 atgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 514  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  10116745 atgattgttaaatttaacaaacaaacctgataaagttcaagattttgaaggttagggc 10116802  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 48675087 - 48675232
Alignment:
Q  83 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 182  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||   ||||||| || ||  || | ||||| || | | || |||||||    
T  48675087 tatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcatag 48675186  T
Q  183 ttcgtaaaactcttgcattctttagaataaattttgctaacataat 228  Q
    || |||||||| ||||||| ||||||||| || |||||||||||||    
T  48675187 tttgtaaaacttttgcattatttagaatatatcttgctaacataat 48675232  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 36199445 - 36199331
Alignment:
Q  176 gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaag 275  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||||||| ||     ||||||||| || |||| ||||||||||||||| ||||||    
T  36199445 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggt---cgtgttgtaggtctacaaaagcgaagtcccgaatagtgcaag 36199349  T
Q  276 ttgtaaggtttaatgaaa 293  Q
    || |||| | ||||||||    
T  36199348 ttctaagatataatgaaa 36199331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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