View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290-Insertion-3 (Length: 834)
Name: NF1290-Insertion-3
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 133 - 547
Target Start/End: Complemental strand, 10200641 - 10200216
Alignment:
| Q |
133 |
cactttgtcaacccttagaaaattattgttggagagacataaaataaaaaag-ttgtattcttcttccattagtgagaagacgaattttccatgaatctt |
231 |
Q |
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| T |
10200641 |
cactttgtcaaccctt-gaaaattattgttggagagacataaaataaaaaaggttgtattcttcttccattagtgagaagtcgaattctccatgaatctt |
10200543 |
T |
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| Q |
232 |
taagaaagataggcaacaaaccaatactcttccatagggta-----------caaaatgtttgagatggtcaaaatattatgagaggcacatctaagaca |
320 |
Q |
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| T |
10200542 |
caaaaaagataggcaacaaaccaatactcttccatagggtatttgtaaggtacaaaatgtttgagatggtcaaaatattatgagaggcacatctaagata |
10200443 |
T |
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| Q |
321 |
tacttctcatcgaccagaaataaaaagaaaacattccaatacaacaaatcatttaatcataaaatgatggaaaactaatcatgatcaaagctttagaatt |
420 |
Q |
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| T |
10200442 |
tacttctcatcgaccaggaataaaaagaaaacattccaatacaacaaatcatttaatcataaaatgatggaaaactaatcatgatcaaagctttagaatt |
10200343 |
T |
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| Q |
421 |
tatttattatcttcttctattcacccatataacttttaatttttgcgaaaatttcattaagtcctctcgactcttataacttcataaaatactttgaaat |
520 |
Q |
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| T |
10200342 |
tatttattatcttcttctattcacccgtataacttttaatttttgcgaaaatttcattaagtcctctcaactcttataacttcataaaatactttgaaat |
10200243 |
T |
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| Q |
521 |
tttaagtttgtattatatataaatcca |
547 |
Q |
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| T |
10200242 |
tttaagtttgtattatatataaatcca |
10200216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 653 - 834
Target Start/End: Complemental strand, 10200098 - 10199917
Alignment:
| Q |
653 |
acagtctcctaaaatcttaattcaatacaatccataacttcatgatattagtggcatacattcacttttcaattaacaatatatgaattctcctcacttc |
752 |
Q |
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| T |
10200098 |
acagtctcctaaaatcttaattcaatgcaccccataacttcatgatattagtggcatacattcacttttcaattaacaatatatgaactctcttcacttc |
10199999 |
T |
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| Q |
753 |
tcgtccaaacccaatagtttcagcttggtcccaacttcgtcccacataannnnnnngacaagaaatgttcaaataatagtgt |
834 |
Q |
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| T |
10199998 |
tcgtccaaacccaatagtttcaggttggtcccaacttcgtcccacataatttttttgacaagaaatgttcaaataatagtgt |
10199917 |
T |
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