View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290-Insertion-4 (Length: 818)
Name: NF1290-Insertion-4
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 771; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 8 - 818
Target Start/End: Original strand, 25996713 - 25997523
Alignment:
| Q |
8 |
acggctacagttatcagcttgaactcctaagtcttcaacattcttcataaacacaccaagtttcttcttaatatcctctatagcaatcttcacagcttct |
107 |
Q |
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| T |
25996713 |
acggctacagttatcagcttgaactcctaaatcttcaacattcttcataaacacaccaagtttcttcttaatatcctctatagcaatcttcacagcttct |
25996812 |
T |
|
| Q |
108 |
tcttcaattgcaaaatcaacagtatgaaacaaagatttaacctcgatttcaagccggtcgataagtacgcggatattgtccaaatccttaatagctacat |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| |||||||| |||||||||||||| || ||||||| |
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| T |
25996813 |
tcttcaattgcaaaatcaacagtatgaagcaaagattcaacctcgatttcaagccgatcgataagcacgcggatgttgtccaaatccttgatggctacat |
25996912 |
T |
|
| Q |
208 |
aagtaccagcttgcattgagccaataacttctttctgtcctttcaatgcaatttcatagtttctccaaagtgaatcaatccattttcccatcgaaccgat |
307 |
Q |
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| T |
25996913 |
aagtaccagcttgcattgagccaataacttctttctgtcctttcaatgcaatttcatagtttctccaaagtgaatcaatccattttcccatcgaaccgat |
25997012 |
T |
|
| Q |
308 |
agggatcgatgtagcggctgctaaagccgcagcaacaggtggagctgcaatagctgcagccacaacagaacatattaaaacagctgcaaatgttgctaca |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25997013 |
agggatcgatgtagcggctgctaaagccgcagcaacaggtggagctgcaatagctgcagccacaacagaacatattaaaacagctgcaaatgttgctaca |
25997112 |
T |
|
| Q |
408 |
aatatcatacttgaaactttcctccatgaatgaattcctttcagcttcttatcaagcttgttctttctgatttgaagcttttcaagcattgaagtctgtt |
507 |
Q |
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| T |
25997113 |
aatatcatacttgaaactttcctccatgaatgaattcctttcagcttcttatcaagcttgttctttctgatttgaagcttttcaagcattgaagtctgtt |
25997212 |
T |
|
| Q |
508 |
gcttataaacagattgaaaaatttggaaaaattcctcagtgaaaggatcaccagctgttttaaaattcttcaattcttgcaatgttcttgcatagcattt |
607 |
Q |
| |
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| T |
25997213 |
gcttataaacagattgaaaaatttggaaaaattcctcagtgaaaggatcaccagctgttttaaaattcttcaattcttgcaatgttcttgcatagcattt |
25997312 |
T |
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| Q |
608 |
gtctcctgattcagattcttcctcgaaccgttgaatcgcaacaagaataagcaattggctatccctagctcttttcaagcacttctccaatgcagtgcag |
707 |
Q |
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| T |
25997313 |
gtctcctgattcagattcttcctcgaaccgttgaatcgcaacaagaataagcaattggctatccctagctcttttcaagcacttctccaatgcagtgcag |
25997412 |
T |
|
| Q |
708 |
aaatccaatgtctgcaaactgttttcaaaatattcttcaaccagctcaaacagttcttggctgttccatatgtctttcttgcaatccaagattactttca |
807 |
Q |
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| T |
25997413 |
aaatccaatgtttgcaaactgttttcaaaatattcttcaaccagctcaaacagatcttggctgttccatatgtctttcttgcaatccaagattactttca |
25997512 |
T |
|
| Q |
808 |
caacttcttga |
818 |
Q |
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||||||||||| |
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| T |
25997513 |
caacttcttga |
25997523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 177 - 814
Target Start/End: Original strand, 12557829 - 12558466
Alignment:
| Q |
177 |
cggatattgtccaaatccttaatagctacataagtaccagcttgcattgagccaataacttctttctgtcctttcaatgcaatttcatagtttctccaaa |
276 |
Q |
| |
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|||||||||||||||||||| ||||||||||| | ||| ||| ||||||| | | ||||| || || |||||||||||| |||||||||| || || |
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| T |
12557829 |
cggatattgtccaaatcctttatagctacataggatccaacttccattgagatagttacttccttatgacctttcaatgcattttcatagttcttcataa |
12557928 |
T |
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| Q |
277 |
gtgaatcaatccattttcccatcgaaccgatagggatcgatgtagcggctgctaaagccgcagcaacaggtggagctgcaatagctgcagccacaacaga |
376 |
Q |
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| T |
12557929 |
gtgagtcgatccactttcccattgaaccaattgggatagcagtaacagcagctacagcagctgcaacatgtggagaagcaacagctgctgctacaactga |
12558028 |
T |
|
| Q |
377 |
acatattaaaacagctgcaaatgttgctacaaatatcatacttgaaactttcctccatgaatgaattcctttcagcttcttatcaagcttgttctttctg |
476 |
Q |
| |
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|| || ||||||| |||| ||| ||||||||||| ||| || || |||||||| | | ||| ||| || ||||| ||||||||| |||||| |
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| T |
12558029 |
gcagatcaaaacagaagcaactgtggctacaaatatgataaacgacaccttcctccaaatacggatttgttttagtttcttgtcaagcttgccttttctg |
12558128 |
T |
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| Q |
477 |
atttgaagcttttcaagcatt-gaagtctgttgcttataaacagattgaaaaatttggaaaaattcctcagtgaaaggatcaccagctgttttaaaattc |
575 |
Q |
| |
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| || | || |||||||| | | | || || ||||||||||||||| | |||||||| ||||| ||||||||||||||||| | | |||||| || |
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| T |
12558129 |
agtttcaatttctcaagcatgagtact-tgctgattataaacagattgatatatttggaagaattcttcagtgaaaggatcaccgacagccttaaaactc |
12558227 |
T |
|
| Q |
576 |
ttcaattcttgcaatgttcttgcatagcatttgtctcctgattcagattcttcctcgaaccgttgaatcgcaacaagaataagcaattggctatccctag |
675 |
Q |
| |
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|||| || || || || | | ||||| |||||||| || ||| ||| || || ||| ||||| || ||| |||||||||||| |||||||| | |
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| T |
12558228 |
ttcagctcctgtaacgtcttcacgtagcaattgtctcccgacacagtttcctcatcaaacttttgaagagctacatcaataagcaattgactatccctgg |
12558327 |
T |
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| Q |
676 |
ctcttttcaagcacttctccaatgcagtgcagaaatccaatgtctgcaaactgttttcaaaatattcttcaaccagctcaaacagttcttggctgttcca |
775 |
Q |
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|||| |||| |||||||| || ||| |||||||||| | |||| ||| || || ||||| || || ||||| ||||||||||||||||| || ||||| |
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| T |
12558328 |
ctctcttcagacacttctctaaagcattgcagaaatctagagtcttcaagctattatcaaagtactcctcaacaagctcaaacagttcttgactcttcca |
12558427 |
T |
|
| Q |
776 |
tatgtctttcttgcaatccaagattactttcacaacttc |
814 |
Q |
| |
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||| |||||||| || || |||||||| ||||||||||| |
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| T |
12558428 |
tatatctttcttacagtctaagattaccttcacaacttc |
12558466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 12557657 - 12557761
Alignment:
| Q |
8 |
acggctacagttatcagcttgaactcctaagtcttcaacattcttcataaacacaccaagtttcttcttaatatcctctatagcaatcttcacagcttct |
107 |
Q |
| |
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||||||||| |||||||||| ||||||| ||||| |||||||||||||| || || | |||||||| || || ||||| |||| |||||| ||| || |
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| T |
12557657 |
acggctacatgtatcagcttgtgctcctaaatcttcgacattcttcataaaaactcccaacttcttcttgatttcttctattgcaaccttcactgctcct |
12557756 |
T |
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| Q |
108 |
tcttc |
112 |
Q |
| |
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||||| |
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| T |
12557757 |
tcttc |
12557761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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