View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1290-Insertion-6 (Length: 826)

Name: NF1290-Insertion-6
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1290-Insertion-6
NF1290-Insertion-6
[»] chr1 (3 HSPs)
chr1 (8-826)||(8449368-8450187)
chr1 (599-782)||(48731041-48731230)
chr1 (382-440)||(48730983-48731041)
[»] chr8 (2 HSPs)
chr8 (494-782)||(6869457-6869745)
chr8 (360-495)||(6869771-6869907)
[»] chr3 (4 HSPs)
chr3 (494-782)||(41222066-41222344)
chr3 (360-495)||(41222370-41222504)
chr3 (264-362)||(53660499-53660597)
chr3 (67-156)||(53659935-53660024)
[»] chr2 (2 HSPs)
chr2 (599-782)||(3106495-3106678)
chr2 (360-440)||(3106415-3106495)
[»] chr5 (1 HSPs)
chr5 (271-377)||(9208367-9208473)


Alignment Details
Target: chr1 (Bit Score: 768; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 8 - 826
Target Start/End: Original strand, 8449368 - 8450187
Alignment:
Q  8 aaatcaagtctttgaaattaaccagcttcttcatttatttttaattggatgtagcgataattacctttcttgtgagcagctcccaaataataatcccaaa 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8449368 aaatcaagtctttgaaattaaccagcttcttcagttatttttaattggatgtagcgataattacctttcttgtgagcagctcccaaataataatcccaaa 8449467  T
Q  108 gctgaaaacatcagctttctggttatatggcttatgctcaataaccttttaaagtttaagggaatcacaagttataataagttcaatatatggcaaactg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8449468 gctgaaaacatcagctttctggttatatggcttatgctcaataaccttttaaagtttaagggaatcacaagttataataagttcaatatatggcaaactg 8449567  T
Q  208 ggatgtccttaaagttaagtagccaatagcgatcaacgttatatacaaatatatcgatatacacatacctctggagccatccaccggtacgttccagttt 307  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8449568 ggatgttcttaaagttaagtagccaatagcgatcaatgttatatacaaatatatcgatatacacatacctctggagccatccaccggtacgttccagttt 8449667  T
Q  308 ccgcggtcatgataccggattgattttgcaatctggctacaccaaaatcagcaactttgactacctgttggataagtttttgaacgatgttcacattgac 407  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8449668 ccgcagtcatgataccggattgattttgcaatctggctacaccaaaatcagcaactttgactacctgttggataagtttttgaacgatgttcacattgac 8449767  T
Q  408 ataagttcatatgatgttcactgtaaatcttcacaaatcaagctgcttttagttcctggtttttattaaggtggccaattattgacaattttgtttcatt 507  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8449768 ataagttcatatgatgtttactgtaaatcttcacaaatcaagctgcttttagttcctggtttttattaaggtggccaattattgacaattttgtttcatt 8449867  T
Q  508 tttcggctcaatcaatatgaaattgttttgcacttctaatgatttaccttccagtcgacatgagctttaatgtataataagctagcatgcaataatatac 607  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8449868 ttttggctcaatcaatatgaaattgttttgcacttctaatgatttgccttccagtcgacatgagctttaatgtataataagctagcatgcaataatatac 8449967  T
Q  608 acaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaaattaata 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8449968 acaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaaattaata 8450067  T
Q  708 gtcacttacccctttttcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgc-aataagccactccgtgggagaattca 806  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  8450068 gtcacttacccctttctcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaaataagccactccttgggagacttca 8450167  T
Q  807 attgctacgttgagcaatga 826  Q
    |||||||| |||||||||||    
T  8450168 attgctactttgagcaatga 8450187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 599 - 782
Target Start/End: Original strand, 48731041 - 48731230
Alignment:
Q  599 ataatatacacaactacagttttagagtggtttatattgt-tatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatga 697  Q
    |||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |   |||||||||||| ||||||||  ||||||||||    
T  48731041 ataacatacacaactagagttttagagtggtttatattttatatagtatgatttgaaagcatcaactaagaacaagaacttgtaaaattcaaagaaatga 48731140  T
Q  698 caaattaatagtcacttacccctttttcatccatc-----aaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaa 782  Q
    ||||||||||||||||||||| ||| |||||||||     ||||||||| ||||||||||||||  ||| ||||||||||||||||||||    
T  48731141 caaattaatagtcacttacccatttctcatccatcaaaagaaaagattaacagttttgaggtctgtatgaataatgttgttttgatgcaa 48731230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 48730983 - 48731041
Alignment:
Q  382 agtttttgaacgatgttcacattgacataagttcatatgatgttcactgtaaatcttca 440  Q
    |||||||||||||||||||||||  ||| || ||||||| | |||||||||||||||||    
T  48730983 agtttttgaacgatgttcacatttgcatcagctcatatgttattcactgtaaatcttca 48731041  T

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Target: chr8 (Bit Score: 205; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 494 - 782
Target Start/End: Complemental strand, 6869745 - 6869457
Alignment:
Q  494 aattttgtttcatttttcggctcaatcaatatgaaattgttttgcacttctaatgatttaccttccagtcgacatgagctttaatgtataataagctagc 593  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||| |||| ||||||    
T  6869745 aattatgtatcatttttcggttcaatcaatatgaaattgttttgcacttctaatgatttgccttccactcaacatgagctttagtgtacaatacgctagc 6869646  T
Q  594 atgcaataatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaa 693  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||    
T  6869645 atgccataatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacttgtaaaatcaaaagaa 6869546  T
Q  694 atgacaaattaatagtcacttacccctttttcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaa 782  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  6869545 atgataaattaatagtcacttacccctttctaatccatcaaaagattaacagttttgaagtctctatgtataatgttgttttgatgcaa 6869457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 360 - 495
Target Start/End: Complemental strand, 6869907 - 6869771
Alignment:
Q  360 aactttgactacctgttggataagtttttgaacgatgttcacattgacataagttcatatgatgttcactgtaaatcttcacaaatcaagctgcttttag 459  Q
    |||||| |||||||||| ||||| |||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||| |||||||| | |||||||    
T  6869907 aactttcactacctgtttgataaatttttgaacgatgttcacatagacataagttcatatgttattcaccgtaaatcttcataaatcaagttacttttag 6869808  T
Q  460 ttcctg-gtttttattaaggtggccaattattgacaa 495  Q
    ||||||  |||||||||||||||||||||||||||||    
T  6869807 ttcctgattttttattaaggtggccaattattgacaa 6869771  T

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Target: chr3 (Bit Score: 166; Significance: 2e-88; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 494 - 782
Target Start/End: Complemental strand, 41222344 - 41222066
Alignment:
Q  494 aattttgtttcatttttcggctcaatcaatatgaaattgttttgcacttctaatgatttaccttccagtcgacatgagctttaatgtataataagctagc 593  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||          ||| |||| | | | |||||||||||| |||| |||| ||||||    
T  41222344 aattctgtttcatttttcggttcaatcaatatgaaattgttttgca----------tttgcctttcggccaacatgagctttagtgtacaatacgctagc 41222255  T
Q  594 atgcaataatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaa 693  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  41222254 atgccataatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaa 41222155  T
Q  694 atgacaaattaatagtcacttacccctttttcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaa 782  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | || || |||||||||||| |||||||||| |||||||||||||    
T  41222154 atgacaaattaatagtcacttacccctttctcatccatcaaaatactaacatttttgaggtctctatgtataatgatgttttgatgcaa 41222066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 360 - 495
Target Start/End: Complemental strand, 41222504 - 41222370
Alignment:
Q  360 aactttgactacctgttggataagtttttgaacgatgttcacattgacataagttcatatgatgttcactgtaaatcttcacaaatcaagctgcttttag 459  Q
    |||||| |||||||||| ||||||||||||||| ||||| |||||| |||||||||  ||| | ||||| ||||||||||| |||||||| | |||||||    
T  41222504 aactttcactacctgtttgataagtttttgaacaatgtttacattggcataagttc--atgttattcacggtaaatcttcataaatcaagttacttttag 41222407  T
Q  460 ttcctg-gtttttattaaggtggccaattattgacaa 495  Q
    ||||||  ||||||||||||||| |||||||||||||    
T  41222406 ttcctgattttttattaaggtggtcaattattgacaa 41222370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 53660499 - 53660597
Alignment:
Q  264 atatacacatacctctggagccatccaccggtacgttccagtttccgcggtcatgataccggattgattttgcaatctggctacaccaaaatcagcaac 362  Q
    ||||||||| |||||||||||||||||||| || ||||| || || || ||||| ||||| ||  ||||  ||| ||||||||||||||||||||||||    
T  53660499 atatacacagacctctggagccatccaccgatatgttccggtctctgcagtcattataccagaacgattgcgcactctggctacaccaaaatcagcaac 53660597  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 53659935 - 53660024
Alignment:
Q  67 attacctttcttgtgagcagctcccaaataataatcccaaagctgaaaacatcagctttctggttatatggcttatgctcaataaccttt 156  Q
    |||||||||||||| ||||||||||| | || |||  ||||||| || ||||||||||| || | |||||| ||||||||||||||||||    
T  53659935 attacctttcttgtaagcagctcccagagaacaattgcaaagctaaagacatcagctttgtgatcatatggtttatgctcaataaccttt 53660024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 599 - 782
Target Start/End: Original strand, 3106495 - 3106678
Alignment:
Q  599 ataatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgac 698  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |    
T  3106495 ataatatacacaactagagttttagagtgatttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatggc 3106594  T
Q  699 aaattaatagtcacttacccctttttcatccatcaaaagattagcagttttgaggtctcgatgtataatgttgttttgatgcaa 782  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  3106595 aaattaatagtcacttacccctttctcatccatcaaaagatttacagttttgaggtctctatgtataatgttgttttgatgcaa 3106678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 3106415 - 3106495
Alignment:
Q  360 aactttgactacctgttggataagtttttgaacgatgttcacattgacataagttcatatgatgttcactgtaaatcttca 440  Q
    |||||| ||||||| |  |||||||||||||||||| ||||||||| | |||||||| ||| | |||||||||||||||||    
T  3106415 aactttcactacctatctgataagtttttgaacgatattcacattggcttaagttcacatgttattcactgtaaatcttca 3106495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 271 - 377
Target Start/End: Complemental strand, 9208473 - 9208367
Alignment:
Q  271 catacctctggagccatccaccggtacgttccagtttccgcggtcatgataccggattgattttgcaatctggctacaccaaaatcagcaactttgacta 370  Q
    |||||||| ||||||||||| ||||||||||||||||| || ||||| |  || || ||| |||||| |||||| || |||||||||||||| ||||| |    
T  9208473 catacctcaggagccatccagcggtacgttccagtttcagctgtcatcactccagactgagtttgcactctggcaaccccaaaatcagcaaccttgacca 9208374  T
Q  371 cctgttg 377  Q
     ||||||    
T  9208373 actgttg 9208367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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