View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290-Insertion-7 (Length: 172)
Name: NF1290-Insertion-7
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290-Insertion-7 |
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| [»] scaffold0632 (2 HSPs) |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 21824553 - 21824694
Alignment:
| Q |
27 |
aaaaggttggatagcattgcttacaaggagttacatatatatacaggtaacaaacctatgatcaagtgaatctaataacatcacaaaaactatcgtcgga |
126 |
Q |
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| T |
21824553 |
aaaaggttggatagcattgcttacaaggagttacatatatatacaggtaacaaacctatgatcaagtgaatctaataacatcacaaaaactatcgtcgga |
21824652 |
T |
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| Q |
127 |
acaaaaaatgataatatgataggtttctatagtcaacaaagt |
168 |
Q |
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| T |
21824653 |
acaaaaactgataatatgataggtttctatagtcaacaaagt |
21824694 |
T |
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Target: scaffold0632 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 4344 - 4286
Alignment:
| Q |
110 |
caaaaactatcgtcggaacaaaaaatgataatatgataggtttctatagtcaacaaagt |
168 |
Q |
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| T |
4344 |
caaaaactatcgtatgaccaaaaactaataatatgataggtttctatagtcaacaaagt |
4286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 4388 - 4346
Alignment:
| Q |
37 |
atagcattgcttacaaggagttacatatatatacaggtaacaa |
79 |
Q |
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| T |
4388 |
atagcattgcttgcaaggagttacatatatatacaagtaacaa |
4346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 200848 - 200934
Alignment:
| Q |
8 |
tacacgataatgggtgttcaaaaggttggatagcattgcttacaaggagttacatatatatacaggtaacaaacctatgatcaagtgaat |
97 |
Q |
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| T |
200848 |
tacacgacaatgggcgttcaaa-ggttgaattgcattgcttacaaggagt--cacataaatacaagtaataatcctatgatcaagtgaat |
200934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 89609 - 89525
Alignment:
| Q |
8 |
tacacgataatgggtgttcaaaaggttggatagcattgcttacaaggagttacatatatatacaggtaacaaacctatgatcaagtga |
95 |
Q |
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|||||||||||||||||||| | ||||| || ||||||||| ||||| || ||||| ||| || ||||||| ||||||||||||||| |
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| T |
89609 |
tacacgataatgggtgttcaga-ggttgtattgcattgcttgcaaggcgtcacataaata--caagtaacaatcctatgatcaagtga |
89525 |
T |
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