View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290-Insertion-9 (Length: 109)
Name: NF1290-Insertion-9
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290-Insertion-9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 5e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 38645190 - 38645290
Alignment:
| Q |
8 |
ttagcatctgatgaaattaatagtgagaacacataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataattttgttttatctcttt |
107 |
Q |
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| T |
38645190 |
ttagcatatgatgaaattaatagtgagaacacataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataa-tttgttttatctcttt |
38645288 |
T |
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| Q |
108 |
ct |
109 |
Q |
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|| |
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| T |
38645289 |
ct |
38645290 |
T |
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Target: chr5 (Bit Score: 49; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 33641713 - 33641802
Alignment:
| Q |
8 |
ttagcatctgatgaaattaatagtgagaacacataa----tcttttcaatcacaatatatccaaaattgattttcaaattaaaataattt |
93 |
Q |
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| T |
33641713 |
ttagcttctgatgaaattaatagtgagaacacatatattttcttttcaaacacaattaatcaaaaattgattttcaaattaaaataattt |
33641802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 13610232 - 13610321
Alignment:
| Q |
8 |
ttagcatctgatgaaattaatagtgagaacacata----atcttttcaatcacaatatatccaaaattgattttcaaattaaaataattt |
93 |
Q |
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| T |
13610232 |
ttagcttctgatgaaattaatagtgagaacacatatattttcttttcaaactcaattaatcaaaaattgattttcaaattaaaataattt |
13610321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 54131378 - 54131467
Alignment:
| Q |
8 |
ttagcatctgatgaaattaatagtgagaacacataa----tcttttcaatcacaatatatccaaaattgattttcaaattaaaataattt |
93 |
Q |
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| T |
54131378 |
ttagcttctgatgaaattaatagtgagaacacgtatattttcttttcaaactcaattaatcaaaaattgattttcaaattaaaataattt |
54131467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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