View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12900_high_1_N (Length: 388)
Name: NF12900_high_1_N
Description: NF12900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12900_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 29905444 - 29905800
Alignment:
| Q |
10 |
gaagaatatctaacataaaataaagtaggaggtgacaacacgttgatatatttgttcatgttgagtaatagtgtactttttgttttatacaaatataaag |
109 |
Q |
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| T |
29905444 |
gaagaaaacctaacataaaataaagtaggaggtgacaacacgttgatatatttgttcatgttgagtaatagtgtactttttgttttatacaaatataaag |
29905543 |
T |
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| Q |
110 |
tttgataaaatcaagaaccaaaaatcttaaattgatatttaattgatgtttaaaattttaaaactaaatcaaatagagtttacttgatatacccaaatta |
209 |
Q |
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| T |
29905544 |
tttgataaaaccaagaaccaaaaatctta-----------aattgatgtttaaaattttaagactaaatcaaatagagtttacttgatatacccaaatta |
29905632 |
T |
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| Q |
210 |
catgtggattttaacctcgaggataaccatacacattacacaccatgtttactattcaatatatttacaatgtatgcactatatcttttgnnnnnnnnnn |
309 |
Q |
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| T |
29905633 |
catgtggattttaacctcgaggataacca-------tacacaccatgtttactattcaatatatttacaatgtatgcactatatcttttgtttttttgtt |
29905725 |
T |
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| Q |
310 |
nngtttacaatcaactatatttactataattaatatactaattactatttgccatacttattatttaatccataaact |
387 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29905726 |
ttgtttacaatcaactatatttactataattaatatac---ttactatttgccatacttattatttaatccataaact |
29905800 |
T |
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