View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12900_high_5 (Length: 321)
Name: NF12900_high_5
Description: NF12900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12900_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 51 - 310
Target Start/End: Complemental strand, 33850243 - 33849985
Alignment:
| Q |
51 |
aaccatgttattggtgcaaatattccatcgactcttctcaatgattgatcttcatcggaaaattcggctaactatctttaacgtggtcactcctcacaga |
150 |
Q |
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| T |
33850243 |
aaccatgttattggtgcaagtattccatcgactcttctcaatgattaatcttcgtcggaaaattcgactaactatctttaacgtggtcactcctcacaga |
33850144 |
T |
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| Q |
151 |
cgtattttttcatagttatcttgatgagagttgtacggttgagggtgtctattgagccttagggatgagcgcgtgatgctcgagttgttgggttggatac |
250 |
Q |
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| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33850143 |
catattttttcatagttatctt-atgagagttgtacggttgagggtgtctgttgagccttagggatgagcgcgtgatgctcaagttgttgggttggatac |
33850045 |
T |
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| Q |
251 |
tcggattaggccttgtcatccatatatgctgatggaaaaatgtgtaataaatagtataat |
310 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
33850044 |
tcggattaggccttgtcatccatatatgttaatggaaaaatgtgtaataaatagtataat |
33849985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 51 - 310
Target Start/End: Original strand, 33943735 - 33943993
Alignment:
| Q |
51 |
aaccatgttattggtgcaaatattccatcgactcttctcaatgattgatcttcatcggaaaattcggctaactatctttaacgtggtcactcctcacaga |
150 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33943735 |
aaccatgttattggtgcaagtattccatcgactcttctcaatgattaatcttcgtcggaaaattcgactaactatctttaacgtggtcactcctcacaga |
33943834 |
T |
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| Q |
151 |
cgtattttttcatagttatcttgatgagagttgtacggttgagggtgtctattgagccttagggatgagcgcgtgatgctcgagttgttgggttggatac |
250 |
Q |
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| T |
33943835 |
catattttttcatagttatctt-atgagagttgtacggttgagggtgtctgttgagccttagggatgagcgcgtgatgctcaagttgttgggttggatac |
33943933 |
T |
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| Q |
251 |
tcggattaggccttgtcatccatatatgctgatggaaaaatgtgtaataaatagtataat |
310 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
33943934 |
tcggattaggccttgtcatccatatatgttaatggaaaaatgtgtaataaatagtataat |
33943993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 33850292 - 33850264
Alignment:
| Q |
2 |
atctatcattctacaaaacttatacatca |
30 |
Q |
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| T |
33850292 |
atctatcattctacaaaacttatacatca |
33850264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 33943686 - 33943714
Alignment:
| Q |
2 |
atctatcattctacaaaacttatacatca |
30 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33943686 |
atctatcattctacaaaacttatacatca |
33943714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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