View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12900_high_6 (Length: 312)

Name: NF12900_high_6
Description: NF12900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12900_high_6
NF12900_high_6
[»] chr3 (26 HSPs)
chr3 (10-312)||(2476309-2476614)
chr3 (24-311)||(7324516-7324803)
chr3 (18-305)||(9562064-9562345)
chr3 (65-312)||(2491754-2492001)
chr3 (197-312)||(2501829-2501944)
chr3 (195-308)||(9566094-9566207)
chr3 (188-312)||(2644614-2644738)
chr3 (195-312)||(754880-754997)
chr3 (191-312)||(2631014-2631135)
chr3 (72-312)||(2474777-2475018)
chr3 (195-312)||(9594901-9595018)
chr3 (189-312)||(2659402-2659525)
chr3 (195-312)||(747409-747526)
chr3 (11-119)||(754687-754795)
chr3 (192-312)||(7334537-7334657)
chr3 (195-312)||(679491-679608)
chr3 (12-97)||(747217-747302)
chr3 (191-308)||(7443256-7443373)
chr3 (192-243)||(768615-768666)
chr3 (14-119)||(7334314-7334425)
chr3 (14-119)||(9565904-9566009)
chr3 (194-251)||(9608626-9608683)
chr3 (60-119)||(7443116-7443175)
chr3 (14-113)||(2659227-2659332)
chr3 (270-311)||(13497873-13497914)
chr3 (138-251)||(44001330-44001443)
[»] chr5 (1 HSPs)
chr5 (207-257)||(20292707-20292757)
[»] chr1 (2 HSPs)
chr1 (194-260)||(51221480-51221546)
chr1 (69-115)||(51381594-51381640)
[»] chr7 (1 HSPs)
chr7 (263-308)||(27755327-27755372)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 2476614 - 2476309
Alignment:
Q  10 gcagagacacacaagcaatccctcaccacatccaagg---tccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaat 106  Q
    ||||||| |||||||||||||||||| |||||||||    ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  2476614 gcagagatacacaagcaatccctcactacatccaagaagatccacgaatgacacttgtaatcaggtagcaaaagcagttgatatgactccttctttaaat 2476515  T
Q  107 caagagaaagaatttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccccgtctgcaaatgctgccagaatatgggatgtcatc 206  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||| |  ||||||||||||||| |     
T  2476514 caagagaaagaatttttgaatcatcaagggccaaccaattaagagtgccactcacaaatactccccgtctacaaatgccgtaagaatatgggatgtcctg 2476415  T
Q  207 tattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaatgatcataccca 306  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  2476414 cattcttgtccaataatcagtccccaaagtattaacactaacttcgtttttgtcagaaacaagaatgaccttgtagttatcaatagaatgatcataccca 2476315  T
Q  307 aagctt 312  Q
    ||||||    
T  2476314 aagctt 2476309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 7324516 - 7324803
Alignment:
Q  24 gcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaagaattttt 123  Q
    ||||||||||||||||| |||| ||||  | | ||  ||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||    
T  7324516 gcaatccctcaccacatgcaagatccataagtcattttcggaatcaggtagcaaaagatgttgatatgactccttgtttaaatcaagcgaaagaatattt 7324615  T
Q  124 gaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccccgtctgcaaatgctgccagaatatgggatgtcatctattcttctccaataat 223  Q
    |||||||||   | ||||||||||| ||||||| | | |||||||||| |||  |||||| || |||||||||||||||| ||||||||| |||||||||    
T  7324616 gaatcatcacttgccaaccaattaacagtgccattgacaaatactccctgtccacaaatgttgtcagaatatgggatgtcctctattcttgtccaataat 7324715  T
Q  224 cagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaatgatcatacccaaagct 311  Q
    |||||||||||||||||||||||||||  ||||||  |||||||| ||||||||||||||||||||| |||||||| |||||||||||    
T  7324716 cagtccccaaagtattaacactaactttatttttggaagaaacaacaatgaccttatagttatcaattaaatgatcgtacccaaagct 7324803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 9562064 - 9562345
Alignment:
Q  18 acacaagcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaaga 117  Q
    ||||||||||| ||| | |||| ||||| ||||| | | || ||||  |||||||||||||| ||||||||| |||||||||| || ||||||||| |||    
T  9562064 acacaagcaattccttagcacacccaagatccacaagtcattctcggtatcaggtagcaaaacctgttgatacgactccttctctacatcaagagagaga 9562163  T
Q  118 atttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccccgtctgcaaatgctgccagaatatgggatgtcatctattcttctcc 217  Q
    ||   ||||||||||   | ||||||||||| ||||||||||| ||||||||||  ||   ||||| |      |||||||||||| ||||||||  |||    
T  9562164 ataaatgaatcatcacttgccaaccaattaacagtgccactcacaaatactccctctccaaaaatgtt------atatgggatgtcctctattctcttcc 9562257  T
Q  218 aataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaatgatcataccc 305  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||| |||||||| ||||||||||||||    
T  9562258 aataatcagtccccaaagtataaacactaacttcatttttggtagaaacaacaatgaccttataattatcaatgaaatgatcataccc 9562345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 65 - 312
Target Start/End: Complemental strand, 2492001 - 2491754
Alignment:
Q  65 aatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaagaatttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaa 164  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||   ||||||||||   |  |||||||||| ||||||||| |  ||    
T  2492001 aatcaggtaggaaaagttgttgatatgactccttctctaaatcaagagaaagaatacatgaatcatcacatgctaaccaattaacagtgccactaacgaa 2491902  T
Q  165 tactccccgtctgcaaatgctgccagaatatgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaa 264  Q
    ||||||   ||   |||||  | |||||||||||||||| |  |||||| |||||||||||||||||||||||| |||||||||||| |||| |  ||||    
T  2491901 tactccgtttccataaatggggtcagaatatgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaa 2491802  T
Q  265 acaagaatgaccttatagttatcaataaaatgatcatacccaaagctt 312  Q
    |||  |||||||||||| | |||||| |||||||||||||||||||||    
T  2491801 acaccaatgaccttataatcatcaatgaaatgatcatacccaaagctt 2491754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 2501944 - 2501829
Alignment:
Q  197 ggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaatg 296  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||| |||||||| |||| || |||||||| |||||||||||| |||||||| |||||    
T  2501944 ggatgtcctctatctttctccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaacaatgaccttataattatcaatgaaatg 2501845  T
Q  297 atcatacccaaagctt 312  Q
    |||||| |||||||||    
T  2501844 atcatatccaaagctt 2501829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 9566094 - 9566207
Alignment:
Q  195 tgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaa 294  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |||||  ||||||||  ||||| |||||| |||||||| |||    
T  9566094 tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttcattttttgtagaaacagaaatgagcttataattatcaatgaaa 9566193  T
Q  295 tgatcatacccaaa 308  Q
    ||||||||||||||    
T  9566194 tgatcatacccaaa 9566207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 188 - 312
Target Start/End: Original strand, 2644614 - 2644738
Alignment:
Q  188 cagaatatgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatc 287  Q
    |||||||||| ||||| | ||||||| |||||||||||||||||||||||||||| |||||||| |||| || |||||||| |||||||||||| |||||    
T  2644614 cagaatatggaatgtcctgtattcttgtccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaataatgaccttataattatc 2644713  T
Q  288 aataaaatgatcatacccaaagctt 312  Q
    ||  || |||||||| |||||||||    
T  2644714 aacgaagtgatcatatccaaagctt 2644738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 754880 - 754997
Alignment:
Q  195 tgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaa 294  Q
    |||||| || ||||||||| ||||||||||||||||||| |||| ||||| |||||| |||||  ||||||||  ||||||||| || |||| ||| |||    
T  754880 tgggatatcctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaacagaaatgaccttgtaattatgaatgaaa 754979  T
Q  295 tgatcatacccaaagctt 312  Q
    ||||||||||||||||||    
T  754980 tgatcatacccaaagctt 754997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 312
Target Start/End: Complemental strand, 2631135 - 2631014
Alignment:
Q  191 aatatgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaat 290  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||| || |  |||||| ||||||  |||||||  |||||||||||| ||||||||    
T  2631135 aatatgggatgtcgtctattcttttccaataatcagtccctaaagtataaagaaaaacttcatttttggaagaaacagcaatgaccttatacttatcaat 2631036  T
Q  291 aaaatgatcatacccaaagctt 312  Q
     |||  ||||||||||||||||    
T  2631035 gaaacaatcatacccaaagctt 2631014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 72 - 312
Target Start/End: Complemental strand, 2475018 - 2474777
Alignment:
Q  72 tagcaaaagctgttgatatgactccttctttaaatcaagagaaagaatttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccc 171  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||   ||||| ||||   | ||||||||| | ||||||||||| ||| | |||     
T  2475018 tagcaaaagttgttgatatgactccttctctaaatcaagagaaagaatacgtgaataatcacttggcaaccaatttacagtgccactcacaaacattcca 2474919  T
Q  172 cgtctgcaaatgctgccagaatatgggatgtcatctattcttctccaataatcagtcc-ccaaagtattaacactaacttcgtttttgttagaaacaaga 270  Q
      |   |  ||   |  |  |||||||||||| ||||||||| |||||||||||||||   |||||||||||||||||||| ||||||  |||||  | |    
T  2474918 tatagaccgatatagtaatcatatgggatgtcctctattcttgtccaataatcagtccttaaaagtattaacactaacttcatttttggaagaaaataca 2474819  T
Q  271 atgaccttatagttatcaataaaatgatcatacccaaagctt 312  Q
    ||| |||| || |||||||| ||||||||||| |||||||||    
T  2474818 atggccttgtaattatcaatgaaatgatcatatccaaagctt 2474777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 9594901 - 9595018
Alignment:
Q  195 tgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaa 294  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| ||||  ||| || ||||||  || || |  |||||||||||| |||||||| |||    
T  9594901 tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcatttttggaagcaaaatcaatgaccttatacttatcaatgaaa 9595000  T
Q  295 tgatcatacccaaagctt 312  Q
    ||||||||||| ||||||    
T  9595001 tgatcatacccgaagctt 9595018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 189 - 312
Target Start/End: Original strand, 2659402 - 2659525
Alignment:
Q  189 agaatatgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatca 288  Q
    ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||   | ||||||  ||||     ||  |||||||| ||||||    
T  2659402 agaatatggaatgtcctttattcttctccaataatcagtccccaaagtattaacactaatcacttttttgaaagaatgggcaacaaccttataattatca 2659501  T
Q  289 ataaaatgatcatacccaaagctt 312  Q
    |||||||||||||| |||||||||    
T  2659502 ataaaatgatcatatccaaagctt 2659525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 747409 - 747526
Alignment:
Q  195 tgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaa 294  Q
    ||||||| | ||||||||| |||||||||||| |||||||||||||| |  ||| || ||||    |||||||| || ||||||||| |||||||| |||    
T  747409 tgggatgccctctattcttttccaataatcagcccccaaagtattaaaaaaaacctctttttctgaagaaacaacaacgaccttataattatcaatgaaa 747508  T
Q  295 tgatcatacccaaagctt 312  Q
    |||||||| |||||||||    
T  747509 tgatcatatccaaagctt 747526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 754687 - 754795
Alignment:
Q  11 cagagacacacaagcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaag 110  Q
    |||||| | ||||||||||||||| || | ||||  |  |||||| ||| | | ||| |||||||||||| ||||||||||||||||||| |||||||||    
T  754687 cagagagaaacaagcaatccctcatcaaacccaacatggacgaatcataattggaattaggtagcaaaagatgttgatatgactccttctctaaatcaag 754786  T
Q  111 agaaagaat 119  Q
    |||||||||    
T  754787 agaaagaat 754795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 7334537 - 7334657
Alignment:
Q  192 atatgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaata 291  Q
    |||||| ||| ||||||||  | ||||||||||||| |||||||||| |||||||||||  |||||   |||||||  || ||||||||| ||||||||     
T  7334537 atatggaatgccatctatttgtttccaataatcagttcccaaagtataaacactaacttttttttttacagaaacagcaacgaccttataattatcaatg 7334636  T
Q  292 aaatgatcatacccaaagctt 312  Q
    ||||||||||| || ||||||    
T  7334637 aaatgatcatatccgaagctt 7334657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 679491 - 679608
Alignment:
Q  195 tgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaataaaa 294  Q
    ||||||| | ||||||||| |||||||||||  ||||||||||||||||| ||| || ||||    |||||||| ||  |||||||  |||||||| |||    
T  679491 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 679590  T
Q  295 tgatcatacccaaagctt 312  Q
    |||||||| |||||||||    
T  679591 tgatcatatccaaagctt 679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 747217 - 747302
Alignment:
Q  12 agagacacacaagcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactcct 97  Q
    |||||||||||||||||||||| || ||  ||||||||| |||| || |||  | |||||||||||||| ||||||||||||||||    
T  747217 agagacacacaagcaatccctcgccgcactcaaggtccatgaatcattctcagattcaggtagcaaaagttgttgatatgactcct 747302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 308
Target Start/End: Original strand, 7443256 - 7443373
Alignment:
Q  191 aatatgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgttagaaacaagaatgaccttatagttatcaat 290  Q
    |||| |||||||  ||||||||||||||||||||||||||||||| |||||||  ||| || | ||||  ||||| |  ||  || ||||| ||||||||    
T  7443256 aataagggatgttctctattcttctccaataatcagtccccaaagcattaacaaaaacctcatatttggaagaaatagcaacaactttataattatcaat 7443355  T
Q  291 aaaatgatcatacccaaa 308  Q
     |||||||||||||||||    
T  7443356 gaaatgatcatacccaaa 7443373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 768615 - 768666
Alignment:
Q  192 atatgggatgtcatctattcttctccaataatcagtccccaaagtattaaca 243  Q
    |||||||||||| |||||||||||||||||||| || |||||||||| ||||    
T  768615 atatgggatgtcctctattcttctccaataatctgttcccaaagtataaaca 768666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 7334314 - 7334425
Alignment:
Q  14 agacacacaagcaatccctcaccacatccaaggtccac-gaa-----tgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatc 107  Q
    |||||||||||||||||||||||| ||||||  ||||| |||     | || ||| |||| |||||| ||||| || ||||||||||| |||| ||||||    
T  7334314 agacacacaagcaatccctcaccatatccaaaatccactgaacattttcattctcataattaggtaggaaaagttgctgatatgactctttctctaaatc 7334413  T
Q  108 aagagaaagaat 119  Q
    ||||||||||||    
T  7334414 aagagaaagaat 7334425  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 9565904 - 9566009
Alignment:
Q  14 agacacacaagcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagaga 113  Q
    |||||||||||||| ||||||||| | ||||  || || ||| |  || | ||| |||||||||||| |||||||||||||| ||   ||||||||||||    
T  9565904 agacacacaagcaacccctcaccaaacccaacatcgaccaatcaatcttggaattaggtagcaaaagatgttgatatgactcttttactaaatcaagaga 9566003  T
Q  114 aagaat 119  Q
    ||||||    
T  9566004 aagaat 9566009  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 9608626 - 9608683
Alignment:
Q  194 atgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttc 251  Q
    |||||| ||| | ||| ||||||||||||||||| |||||||||| ||||||||||||    
T  9608626 atgggaagtcttgtatccttctccaataatcagtgcccaaagtatgaacactaacttc 9608683  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 7443116 - 7443175
Alignment:
Q  60 ctcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaagaat 119  Q
    |||| |||||||||| ||||| | |||||| |||||||| | ||||||||||||||||||    
T  7443116 ctcggaatcaggtaggaaaagtttttgatacgactccttttctaaatcaagagaaagaat 7443175  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 2659227 - 2659332
Alignment:
Q  14 agacacacaagcaatccctcaccacatccaaggtccacgaatgatactcgt------aatcaggtagcaaaagctgttgatatgactccttctttaaatc 107  Q
    |||||||||||||||||||||||||| ||| |  |||||||| ||  || |      |||||||||||  ||||| |||||| |||||||||| ||||||    
T  2659227 agacacacaagcaatccctcaccacacccacgtcccacgaattattttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatc 2659326  T
Q  108 aagaga 113  Q
    ||||||    
T  2659327 aagaga 2659332  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 13497914 - 13497873
Alignment:
Q  270 aatgaccttatagttatcaataaaatgatcatacccaaagct 311  Q
    |||||||||||| |||| ||| ||||||||||||||||||||    
T  13497914 aatgaccttataattatgaatgaaatgatcatacccaaagct 13497873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 44001443 - 44001330
Alignment:
Q  138 caaccaattaaaagtgccactcaaaaatactccccgtctgcaaatgctgccagaatatgggatgtcatctattcttctccaataatcagtccccaaagta 237  Q
    ||||||||||| ||||||||||| |||||||||  ||||    ||||| | ||||||||||| || ||  || || ||||||||| |||| |||| | ||    
T  44001443 caaccaattaacagtgccactcacaaatactcctggtctaggcatgctacgagaatatgggaagttatggatcctcctccaataaccagtacccatacta 44001344  T
Q  238 ttaacactaacttc 251  Q
    | ||||||||||||    
T  44001343 tgaacactaacttc 44001330  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 20292757 - 20292707
Alignment:
Q  207 tattcttctccaataatcagtccccaaagtattaacactaacttcgttttt 257  Q
    ||||||||||||||| ||||| |||||||||| |||||||| ||| |||||    
T  20292757 tattcttctccaatattcagtacccaaagtatgaacactaatttcattttt 20292707  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 51221480 - 51221546
Alignment:
Q  194 atgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttcgtttttgtt 260  Q
    |||||| |||||| ||  ||||||||||||| || |||||||||| |||| |||||||| |||||||    
T  51221480 atgggaagtcatcgatctttctccaataatcggtacccaaagtatgaacattaacttcgcttttgtt 51221546  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 51381594 - 51381640
Alignment:
Q  69 aggtagcaaaagctgttgatatgactccttctttaaatcaagagaaa 115  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||||||    
T  51381594 aggttgcaaaagctttcgatatgactccttgtttaaatcaagagaaa 51381640  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 27755372 - 27755327
Alignment:
Q  263 aaacaagaatgaccttatagttatcaataaaatgatcatacccaaa 308  Q
    |||||| |||||||||||| | |||||| |||||||||||||||||    
T  27755372 aaacaacaatgaccttataatcatcaatgaaatgatcatacccaaa 27755327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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